Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

1398401 .. 1399094

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACATCTCCCACCACCATGCGCACATCTTCTACGACCTCACCCGCCGCTGCTTCGCGCTGGAGGTCATCAAGAAGAATGGCTACCTCGTGGAGGGGATTGTCCACCTCCCCAGAAACCTTCTGGTCAAGTTCGATTCACAGGATCCGCTTCAGATTGGGGATAAAGAGTTTTACTTTGTGTTACGGATAAGGATTACTCTAGGTGGATCTATTGAGCCTAGGCATTATGCGATGGCGGTCGGGGGAGGAGTTGCGAGAGTGGCCGTCGATGGAGGAGTGGGAATGGGGAAGGGAGCCGATGGGGCTGAGGACGAGGGTGGACTAAAAAGATCTAGTGGTCTTCTCTCTGTTGTGGGAGTCTCCGAATGGGCTTTCTTGAACTTGAGGCTCGCGGCTCGGAGACTTGAACTTGCTGCGGCTATCTTACTCGGAGATTTGGATTGCTTGGAAGAGACTTGCAGCGGCGGCGGAGGAGGACGAAGAGACTTGAAGGCTGGGTTCGAATGTTCGACTAAGGGATTGAATTTGAAATCTAGAGGGGGATTGAATCATTTGTATGGGATTGAAGGCTGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

193

Amino Acids

20.79

Weight (kDa)

7.74

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AccII	CGCG	2 cut(s)	59, 395
AciI	CCGC	9 cut(s)	46, 49, 149, 239, 395, 419, 465, 468, 471
AclWI	GGATC	3 cut(s)	140, 153, 217
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	7 cut(s)	382, 410, 493, 526, 532, 550, 569
Alw26I	GTCTC	4 cut(s)	367, 397, 449, 480
AlwI	GGATC	3 cut(s)	140, 153, 217
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	51, 416, 462
ApoI	RAATTY	1 cut(s)	526
AspA2I	CCTAGG	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	25, 61
AsuHPI	GGTGA	1 cut(s)	34
AsuII	TTCGAA	1 cut(s)	504
AvrII	CCTAGG	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	38, 403, 474
BccI	CCATC	3 cut(s)	229, 266, 296
BceAI	ACGGC	1 cut(s)	251
BcoDI	GTCTC	4 cut(s)	367, 397, 449, 480
BfaI	CTAG	4 cut(s)	203, 222, 336, 537
BglI	GCCNNNNNGGC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	8 cut(s)	49, 52, 396, 417, 420, 463, 466, 469
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	8 cut(s)	50, 53, 397, 418, 421, 464, 467, 470
BmiI	GGNNCC	2 cut(s)	147, 298
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	3 cut(s)	264, 291, 489
BseXI	GCAGC	3 cut(s)	38, 403, 474
BseYI	CCCAGC	2 cut(s)	497, 573
Bsh1236I	CGCG	2 cut(s)	59, 395
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	4 cut(s)	367, 397, 449, 480
BsnI	GGCC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	145, 209, 332
BspACI	CCGC	9 cut(s)	46, 49, 149, 239, 395, 419, 465, 468, 471
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	2 cut(s)	59, 395
BspLI	GGNNCC	2 cut(s)	147, 298
BspPI	GGATC	3 cut(s)	140, 153, 217
BspT104I	TTCGAA	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	145, 209, 332
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	89
Bst6I	CTCTTC	2 cut(s)	447, 478
BstBI	TTCGAA	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	309, 516
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	2 cut(s)	59, 395
BstHHI	GCGC	2 cut(s)	25, 61
BstKTI	GATC	3 cut(s)	148, 212, 335
BstMAI	GTCTC	4 cut(s)	367, 397, 449, 480
BstMBI	GATC	3 cut(s)	145, 209, 332
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 305, 468
BstUI	CGCG	2 cut(s)	59, 395
BstV1I	GCAGC	3 cut(s)	38, 403, 474
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	3 cut(s)	145, 209, 332
BstYI	RGATCY	3 cut(s)	145, 209, 332
BsuRI	GGCC	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	25, 61
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	309, 516
DpnI	GATC	3 cut(s)	147, 211, 334
DpnII	GATC	3 cut(s)	145, 209, 332
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	447, 478
EarI	CTCTTC	2 cut(s)	447, 478
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	21, 231, 561, 580
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	8 cut(s)	49, 52, 396, 417, 420, 463, 466, 469
Fsp4HI	GCNGC	8 cut(s)	49, 52, 396, 417, 420, 463, 466, 469
FspAI	RTGCGCAY	1 cut(s)	24
FspBI	CTAG	4 cut(s)	203, 222, 336, 537
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 60
GluI	GCNGC	8 cut(s)	49, 52, 396, 417, 420, 463, 466, 469
GsaI	CCCAGC	2 cut(s)	501, 577
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	25, 61
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	23, 59
HinP1I	GCGC	2 cut(s)	23, 59
HinfI	GANTC	3 cut(s)	137, 360, 550
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	106, 323
Hpy188I	TCNGA	4 cut(s)	156, 367, 402, 434
Hpy188III	TCNNGA	3 cut(s)	73, 379, 537
Hpy8I	GTNNAC	2 cut(s)	106, 323
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	4 cut(s)	131, 286, 487, 563
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 305, 468
HpyF3I	CTNAG	2 cut(s)	309, 516
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	2 cut(s)	23, 59
Kzo9I	GATC	3 cut(s)	145, 209, 332
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	6 cut(s)	47, 110, 127, 128, 483, 559
Lsp1109I	GCAGC	3 cut(s)	38, 403, 474
MaeI	CTAG	4 cut(s)	203, 222, 336, 537
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	3 cut(s)	147, 211, 334
MboI	GATC	3 cut(s)	145, 209, 332
MboII	GAAGA	5 cut(s)	22, 88, 335, 464, 495
MflI	RGATCY	3 cut(s)	145, 209, 332
MluCI	AATT	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	369
MslI	CAYNNNNRTG	2 cut(s)	18, 558
MspA1I	CMGCKG	2 cut(s)	51, 465
MvnI	CGCG	2 cut(s)	59, 395
MwoI	GCNNNNNNNGC	3 cut(s)	263, 305, 468
NdeII	GATC	3 cut(s)	145, 209, 332
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	147, 298
NsbI	TGCGCA	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	137, 550
PkrI	GCNGC	8 cut(s)	50, 53, 397, 418, 421, 464, 467, 470
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PspFI	CCCAGC	2 cut(s)	497, 573
PspN4I	GGNNCC	2 cut(s)	147, 298
PsuI	RGATCY	3 cut(s)	145, 209, 332
RseI	CAYNNNNRTG	2 cut(s)	18, 558
SatI	GCNGC	8 cut(s)	49, 52, 396, 417, 420, 463, 466, 469
Sau3AI	GATC	3 cut(s)	145, 209, 332
SchI	GAGTC	1 cut(s)	369
SetI	ASST	6 cut(s)	42, 69, 90, 111, 123, 208
SfuI	TTCGAA	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	18, 558
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	9 cut(s)	46, 49, 149, 239, 395, 419, 465, 468, 471
SspMI	CTAG	4 cut(s)	203, 222, 336, 537
StyI	CCWWGG	1 cut(s)	221
TaqI	TCGA	4 cut(s)	135, 270, 504, 512
TasI	AATT	1 cut(s)	526
TauI	GCSGC	5 cut(s)	51, 398, 422, 468, 471
TfiI	GAWTC	2 cut(s)	137, 550
TseI	GCWGC	3 cut(s)	51, 416, 462
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	526
XbaI	TCTAGA	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	221
XspI	CTAG	4 cut(s)	203, 222, 336, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.