Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

46444504 .. 46447426

Gene Structure 2923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGCGAGGGAAGCTCCAAAGAAGACAACGGTGTTTCTTCAACTTCGAGTCATCCTCCAAAGAAGGAGGATATGGAGGAGGAGAAGGATCACGTCGGGAGAAGAGATTTGGATTGCTGGGAAAAGAGAAGAAAGGTCGCGGCTCGGAGACTTAAACTTACGGCGGCTATCTTACTCGGAGATTTGGATTGCTTGGAAGAGACTTGCAGCTACGGCGGAGGAGGACGAAGAGACTTGAAGGCTGAGTTCGAATGTTCGACTAAGGGATTGAATTTGAAATTTGGAAGGGGATTGAATCTTTTGTATGGGATGGAATTGAAGGTTAGGATAATCGTGGCTGAAGGCGAGGTCGCATCTTTGCGGCTTTATGTTCCTAAAGTTGCTGGATATGGGGAGGATGAGGAAAAGGAAGATGGTTGGGAGAGAAAATCTAGTAAGAGGAGTTGCTACGACTCTGCGCAGAAGCTTGAGATTTTTCTTAGTATTGCTTCTGCTCAATTTGATGCTGATCTCCATGGGCACATGCCTAGGCATGTGTGGAAAAATTGTGTGCAGAATATGCTTGTTATTCTTGATATTCGGTGCAATATCCCAACATCCGTGTCGTTGATAAGGAGGAGATTGATGATAATGGATCTCGACTATAATGGGACAATCGGGGTCGGTGGAAACTTGGGGGGTTTTGTGGAAATGATGGATGATGAGTTCTTCAAGAGCTTACGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0031369 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PCI eIF-3c_N

Protein Analysis

242

Amino Acids

27.24

Weight (kDa)

6.03

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-3c_N	PF05470	152 - 241	4.5e-11	Eukaryotic translation initiation factor 3 subunit 8 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
AccII	CGCG	1 cut(s)	140
AciI	CCGC	4 cut(s)	140, 164, 216, 361
AclWI	GGATC	2 cut(s)	96, 642
AcsI	RAATTY	2 cut(s)	271, 278
AcuI	CTGAAG	1 cut(s)	360
AgsI	TTSAA	7 cut(s)	42, 238, 271, 277, 295, 319, 712
AjiI	CACGTC	1 cut(s)	94
AloI	GAACNNNNNNTCC	2 cut(s)	689, 721
AluBI	AGCT	4 cut(s)	15, 210, 466, 717
AluI	AGCT	4 cut(s)	15, 210, 466, 717
Alw26I	GTCTC	3 cut(s)	142, 194, 225
AlwI	GGATC	2 cut(s)	96, 642
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	271, 278
AspA2I	CCTAGG	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	460
AsuII	TTCGAA	1 cut(s)	249
AvrII	CCTAGG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	3 cut(s)	304, 407, 688
BceAI	ACGGC	2 cut(s)	177, 229
BcoDI	GTCTC	3 cut(s)	142, 194, 225
BfaI	CTAG	3 cut(s)	432, 528, 727
BisI	GCNGC	4 cut(s)	141, 165, 208, 362
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	4 cut(s)	142, 166, 209, 363
BmgBI	CACGTC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	362, 493
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	3 cut(s)	31, 40, 72
Bpu14I	TTCGAA	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	514, 527
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	514, 527
BseGI	GGATG	5 cut(s)	52, 315, 403, 596, 703
BseJI	GATNNNNATC	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	5 cut(s)	92, 95, 234, 454, 631
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	664
BsmAI	GTCTC	3 cut(s)	142, 194, 225
BsmFI	GGGAC	1 cut(s)	664
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	88, 508, 634
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	4 cut(s)	140, 164, 216, 361
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	140
BspPI	GGATC	2 cut(s)	96, 642
BspT104I	TTCGAA	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	514, 527
BssMI	GATC	3 cut(s)	88, 508, 634
BssT1I	CCWWGG	2 cut(s)	514, 527
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	97, 192, 223
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	243, 261, 479
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	5 cut(s)	52, 315, 403, 596, 703
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	3 cut(s)	91, 511, 637
BstMAI	GTCTC	3 cut(s)	142, 194, 225
BstMBI	GATC	3 cut(s)	88, 508, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 213, 559
BstNSI	RCATGY	2 cut(s)	526, 536
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	5 cut(s)	52, 315, 403, 596, 703
CfoI	GCGC	1 cut(s)	460
CviAII	CATG	3 cut(s)	515, 523, 533
CviJI	RGCY	9 cut(s)	15, 143, 167, 210, 242, 338, 364, 466, 717
CviKI_1	RGCY	9 cut(s)	15, 143, 167, 210, 242, 338, 364, 466, 717
DdeI	CTNAG	3 cut(s)	243, 261, 479
DpnI	GATC	3 cut(s)	90, 510, 636
DpnII	GATC	3 cut(s)	88, 508, 634
Eam1104I	CTCTTC	3 cut(s)	97, 192, 223
EarI	CTCTTC	3 cut(s)	97, 192, 223
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	514, 527
Eco57I	CTGAAG	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	514, 527
ErhI	CCWWGG	2 cut(s)	514, 527
FaeI	CATG	3 cut(s)	518, 526, 536
FaiI	YATR	9 cut(s)	74, 306, 369, 390, 516, 524, 534, 560, 645
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	3 cut(s)	514, 522, 532
Fnu4HI	GCNGC	4 cut(s)	141, 165, 208, 362
FokI	GGATG	5 cut(s)	39, 322, 410, 583, 710
Fsp4HI	GCNGC	4 cut(s)	141, 165, 208, 362
FspBI	CTAG	3 cut(s)	432, 528, 727
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	4 cut(s)	141, 165, 208, 362
GsaI	CCCAGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	518, 526, 536
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	49, 295, 452, 723
Hpy188I	TCNGA	2 cut(s)	147, 179
Hpy188III	TCNNGA	4 cut(s)	97, 572, 638, 712
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	6 cut(s)	58, 79, 232, 279, 313, 335
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	207, 553, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 213, 559
HpyF3I	CTNAG	3 cut(s)	243, 261, 479
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	518, 526, 536
HspAI	GCGC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	88, 508, 634
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	2 cut(s)	103, 369
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	2 cut(s)	362, 493
MaeI	CTAG	3 cut(s)	432, 528, 727
MaeII	ACGT	1 cut(s)	93
MalI	GATC	3 cut(s)	90, 510, 636
MboI	GATC	3 cut(s)	88, 508, 634
MboII	GAAGA	8 cut(s)	30, 35, 114, 141, 209, 240, 422, 700
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	5 cut(s)	271, 278, 314, 497, 544
MlyI	GAGTC	2 cut(s)	58, 446
MseI	TTAA	1 cut(s)	153
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	12, 213, 559
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	3 cut(s)	88, 508, 634
NlaIII	CATG	3 cut(s)	518, 526, 536
NsbI	TGCGCA	1 cut(s)	459
NspI	RCATGY	2 cut(s)	526, 536
NspV	TTCGAA	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	142, 166, 209, 363
PleI	GAGTC	2 cut(s)	57, 446
PpsI	GAGTC	2 cut(s)	57, 446
PspFI	CCCAGC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	4 cut(s)	141, 165, 208, 362
Sau3AI	GATC	3 cut(s)	88, 508, 634
SchI	GAGTC	2 cut(s)	58, 446
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	8 cut(s)	17, 96, 138, 212, 324, 351, 468, 719
SfaNI	GCATC	2 cut(s)	362, 493
SfuI	TTCGAA	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	271, 278, 314, 497, 544
SsiI	CCGC	4 cut(s)	140, 164, 216, 361
SspMI	CTAG	3 cut(s)	432, 528, 727
StyI	CCWWGG	2 cut(s)	514, 527
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	47, 249, 257, 639
TasI	AATT	5 cut(s)	271, 278, 314, 497, 544
TauI	GCSGC	3 cut(s)	143, 167, 364
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	589
XapI	RAATTY	2 cut(s)	271, 278
XceI	RCATGY	2 cut(s)	526, 536
XmaJI	CCTAGG	1 cut(s)	527
XspI	CTAG	3 cut(s)	432, 528, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.