Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

41023275 .. 41023577

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAACATCTCCCACCACCATGCGCACATCTTCTACGACCTCACCCGCCGCTGCTTCGTGCTGGAGGTCATCAAGAAGAATGGCTCCCTCGTGGAGGGGATTGTCCACCTCCCCAGAAACCTTCTGGTCAAGTTCGATTCACAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTGTGTTACCGATAAGGATTACTCTGGGTGGATCTATTGAGCCCAGGCATTACGCGATGGTGGTCGGGGGAGGTGGTGGTAGTTCCTATCTAGCTTTCTGTAGAGATGATTATATGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

6.57

Isoelectric Point (pI)

67.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	46, 49
AclWI	GGATC	2 cut(s)	153, 217
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	2 cut(s)	153, 217
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	229, 289
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	2 cut(s)	49, 52
BlsI	GCNGC	2 cut(s)	50, 53
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	145, 209
BspACI	CCGC	2 cut(s)	46, 49
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	153, 217
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	145, 209
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	148, 212
BstMBI	GATC	2 cut(s)	145, 209
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	145, 209
BstYI	RGATCY	2 cut(s)	145, 209
BtgZI	GCGATG	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	3 cut(s)	84, 220, 272
CviKI_1	RGCY	3 cut(s)	84, 220, 272
DpnI	GATC	2 cut(s)	147, 211
DpnII	GATC	2 cut(s)	145, 209
Eco24I	GRGCYC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 291, 293
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	49, 52
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	49, 52
FspAI	RTGCGCAY	1 cut(s)	24
FspBI	CTAG	1 cut(s)	269
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	49, 52
GsuI	CTGGAG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	145, 209
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	47, 110, 127, 128, 188, 208, 235
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	147, 211
MboI	GATC	2 cut(s)	145, 209
MboII	GAAGA	2 cut(s)	22, 88
MflI	RGATCY	2 cut(s)	145, 209
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	50, 58, 88, 98, 119, 242
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	233
NdeII	GATC	2 cut(s)	145, 209
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	85
NsbI	TGCGCA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	50, 53
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	145, 209
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	49, 52
Sau3AI	GATC	2 cut(s)	145, 209
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	42, 69, 111, 123, 253, 274
SfcI	CTRYAG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	18
SsiI	CCGC	2 cut(s)	46, 49
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	221
TaqI	TCGA	1 cut(s)	135
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.