Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

54150839 .. 54151379

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAAGAGAGAGACTTCAGGTCGCCACCTAAATCCTTTGGCACCGATCTGGTGAAGCCGTTGTCGGAGAGGTCTATTGGAGGAGATTTTCCGTATCAAACCAAATTTCGGCCAGAATTTCAGAATTTCGCAATTGAATTTGTTTCGGCAAGTATCAGTGTCTGCAATTGTGTACAGTTTTTCAGACATTTGTCTAAGGAACCGGAGAGGGACTTGTTGGAGAGGTCAAGGTTATGGGTACAGTGGTGGGCTGGGTTCTGGATCGAGCACCAAGTCGGGTTCTTTGGCTTTAGTTTATTTTTTGAATCATATGATGGCGGAGGAGTTGCGGGAGTAGTAGCTGACAAGGGATTAGGAGTGGTGAGGGGAGTCAATGGGGCCGAGGACGGGGGTGGACTGAAAAGACGTGGTGGTCTTCTCGCTATTGTGGGGTCGTGGGAAGGGCTTTGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.0

Weight (kDa)

6.74

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	2 cut(s)	318, 329
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	4 cut(s)	104, 116, 124, 137
AfaI	GTAC	2 cut(s)	174, 240
AfiI	CCNNNNNNNGG	2 cut(s)	108, 387
AgsI	TTSAA	2 cut(s)	137, 305
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	407
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	110, 378
ApoI	RAATTY	4 cut(s)	104, 116, 124, 137
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	64, 373
BaeI	ACNNNNGTAYC	2 cut(s)	230, 263
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	270
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	6
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	3 cut(s)	43, 201, 379
BoxI	GACNNNNGTC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 387
BseDI	CCNNGG	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	108, 387
BseRI	GAGGAG	2 cut(s)	96, 336
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	112, 380
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	108, 387
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	112, 380
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	46, 261
BspACI	CCGC	2 cut(s)	318, 329
BspANI	GGCC	2 cut(s)	112, 380
BspLI	GGNNCC	3 cut(s)	43, 201, 379
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	46, 261
Bst4CI	ACNGT	2 cut(s)	177, 243
BstAUI	TGTACA	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	49, 264
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	2 cut(s)	46, 261
BstPAI	GACNNNNGTC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	112, 380
BtrI	CACGTC	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	163, 248
CaiI	CAGNNNCTG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	173, 239
CviJI	RGCY	7 cut(s)	58, 112, 251, 288, 341, 380, 445
CviKI_1	RGCY	7 cut(s)	58, 112, 251, 288, 341, 380, 445
CviQI	GTAC	2 cut(s)	173, 239
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	48, 263
DpnII	GATC	2 cut(s)	46, 261
DrdI	GACNNNNNNGTC	1 cut(s)	411
DriI	GACNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	333
FaiI	YATR	3 cut(s)	235, 310, 312
FaqI	GGGAC	1 cut(s)	224
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	310
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	112, 380
HapII	CCGG	1 cut(s)	203
HinfI	GANTC	2 cut(s)	305, 369
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	64, 373
Hpy166II	GTNNAC	2 cut(s)	173, 395
Hpy188I	TCNGA	3 cut(s)	67, 123, 185
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	2 cut(s)	173, 395
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	177, 243
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	4, 165
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	46, 261
LpnPI	CCDG	6 cut(s)	4, 35, 126, 216, 237, 244
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	48, 263
MboI	GATC	2 cut(s)	46, 261
MboII	GAAGA	1 cut(s)	407
MfeI	CAATTG	2 cut(s)	132, 166
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	6 cut(s)	104, 116, 124, 132, 137, 166
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	2 cut(s)	45, 198
MnlI	CCTC	8 cut(s)	63, 74, 201, 216, 314, 357, 376, 444
MspI	CCGG	1 cut(s)	203
MunI	CAATTG	2 cut(s)	132, 166
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	46, 261
NlaIV	GGNNCC	3 cut(s)	43, 201, 379
NmeAIII	GCCGAG	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PshAI	GACNNNNGTC	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	43, 201, 379
PspPI	GGNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	174, 240
RsaNI	GTAC	2 cut(s)	173, 239
Sau3AI	GATC	2 cut(s)	46, 261
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	23, 31, 74, 227, 233, 343, 409, 455
Sse9I	AATT	6 cut(s)	104, 116, 124, 132, 137, 166
SsiI	CCGC	2 cut(s)	318, 329
TaaI	ACNGT	2 cut(s)	177, 243
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	264
TasI	AATT	6 cut(s)	104, 116, 124, 132, 137, 166
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	2 cut(s)	163, 248
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	163, 248
XapI	RAATTY	4 cut(s)	104, 116, 124, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.