Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

33382076 .. 33383754

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGGTGGAGGATCGAGTTGCGGGAGTGGCAGCTGACAAGGGATTGGGAGTGGTGAGGGGAGTCGATGGGGCTGAGGACGGGGGTGGACTGAAAAGACGTGGTGGTCTTCTCGCCATTATGGGAGTTGTGGGAGGGGCTTTGGAGGATCTCGAGGGGTTTGGTGATCTCGATTGCGAGCGGCTACTGATGGGACTGTCGCCAGAGGTTTGGCCAGTGGCGAAAATCATGAAGGTGGTGCAGATGCAGGGGAACCCTCCTGCTAGTCCAGATCTAACTTGGGCTTCAGTTTACGGGCTTGGGCTCAGGTCAAGGTCAGCTGGGCCTATTGTTGGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.6

Weight (kDa)

4.82

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	2 cut(s)	23, 181
AclWI	GGATC	2 cut(s)	21, 156
AcoI	YGGCCR	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	101
AluBI	AGCT	2 cut(s)	35, 320
AluI	AGCT	2 cut(s)	35, 320
AlwI	GGATC	2 cut(s)	21, 156
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	212, 323
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	67, 176
AvaI	CYCGRG	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	62, 184
BfaI	CTAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	33, 182
BlsI	GCNGC	2 cut(s)	34, 183
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	2 cut(s)	75, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	66, 319
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	214, 325
BsiHKCI	CYCGRG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	214, 325
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	13, 148, 166, 271
BspACI	CCGC	2 cut(s)	23, 181
BspANI	GGCC	2 cut(s)	214, 325
BspCNI	CTCAG	2 cut(s)	67, 318
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	21, 156
BsrBI	CCGCTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	13, 148, 166, 271
Bst4CI	ACNGT	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	75, 305
BstKTI	GATC	4 cut(s)	16, 151, 169, 274
BstMBI	GATC	4 cut(s)	13, 148, 166, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	148, 271
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	2 cut(s)	148, 271
BsuRI	GGCC	2 cut(s)	214, 325
BtrI	CACGTC	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	179
CciI	TCATGA	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	75, 305
DpnI	GATC	4 cut(s)	15, 150, 168, 273
DpnII	GATC	4 cut(s)	13, 148, 166, 271
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	212
Eco24I	GRGCYC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	122, 230
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	33, 182
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	33, 182
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	33, 182
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	214, 325
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	2 cut(s)	67, 176
Hpy166II	GTNNAC	2 cut(s)	89, 292
Hpy188III	TCNNGA	4 cut(s)	152, 170, 229, 269
Hpy8I	GTNNAC	2 cut(s)	89, 292
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	241, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	75, 305
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	13, 148, 166, 271
LpnPI	CCDG	7 cut(s)	216, 228, 233, 273, 282, 292, 306
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	100
MalI	GATC	4 cut(s)	15, 150, 168, 273
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	4 cut(s)	13, 148, 166, 271
MboII	GAAGA	1 cut(s)	101
MflI	RGATCY	2 cut(s)	148, 271
MhlI	GDGCHC	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	4, 51, 70, 128, 139, 148, 199, 267
Mox20I	TGGCCA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	214
MspA1I	CMGCKG	2 cut(s)	35, 320
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	4 cut(s)	13, 148, 166, 271
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	34, 183
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	148, 271
PvuII	CAGCTG	2 cut(s)	35, 320
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	2 cut(s)	33, 182
Sau3AI	GATC	4 cut(s)	13, 148, 166, 271
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	37, 103, 210, 237, 311, 317, 322
SfaNI	GCATC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	2 cut(s)	23, 181
SspMI	CTAG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	16, 66, 153, 171
TauI	GCSGC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.