Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

7280003 .. 7280451

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACATCTCCTCCCACCACACGTGCATCTTCTACGACCTCACCCACTGCTGCTTCAGGCTGGAGGTCCTCAGAAAGCACGGTTGCCTCCTGGAGGGGGTTCTCCACCTCCCCAAAAACCGTCCAGTCAAGCTCAATTCGCAGGATCTGCTTCAAATTAGGGATAAAGAGTTTTACTTTTTGTTGCCTTGTGAGGAGTACTCTGGGTGGCCTATTGAGCCGAGGCATTATGCAGTGGCGATCAGGGGCGGTGGTGGTAGTGGGAAGAAGATGAGGGAAGGGTATGAGGGTTATGGGTACAGTGGTGGGCTAGGTTCTGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGCAATTGGAATTGGGATACAGTTTATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

127

Amino Acids

14.07

Weight (kDa)

8.62

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	2 cut(s)	153, 328
AcuI	CTGAAG	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	200, 299
AfiI	CCNNNNNNNGG	2 cut(s)	94, 97
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	90
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	2 cut(s)	153, 328
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BanI	GGYRCC	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	36
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	83, 113
BsaAI	YACGTR	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 97
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	94, 97
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	94, 97
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	145, 240, 320
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	153, 328
BspT107I	GGYRCC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	145, 240, 320
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	83, 122, 302, 372
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	148, 243, 323
BstMBI	GATC	3 cut(s)	145, 240, 320
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 148, 217
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	211
BtsI	GCAGTG	2 cut(s)	46, 240
BtsIMutI	CAGTG	3 cut(s)	46, 240, 307
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	199, 298
CviJI	RGCY	6 cut(s)	61, 133, 211, 220, 310, 347
CviKI_1	RGCY	6 cut(s)	61, 133, 211, 220, 310, 347
CviQI	GTAC	2 cut(s)	199, 298
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	147, 242, 322
DpnII	GATC	3 cut(s)	145, 240, 320
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	90
FaiI	YATR	3 cut(s)	231, 285, 294
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	1 cut(s)	52
GsuI	CTGGAG	2 cut(s)	83, 113
HaeIII	GGCC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	4 cut(s)	83, 122, 302, 372
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	27, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 148, 217
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	145, 240, 320
LpnPI	CCDG	9 cut(s)	43, 47, 77, 104, 128, 138, 189, 229, 303
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	23
MalI	GATC	3 cut(s)	147, 242, 322
MboI	GATC	3 cut(s)	145, 240, 320
MboII	GAAGA	3 cut(s)	22, 277, 280
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	4 cut(s)	136, 156, 354, 360
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	139, 148, 217
NdeII	GATC	3 cut(s)	145, 240, 320
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	200, 299
RsaNI	GTAC	2 cut(s)	199, 298
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	145, 240, 320
Sau96I	GGNCC	1 cut(s)	67
ScaI	AGTACT	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	6 cut(s)	26, 42, 69, 111, 135, 316
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	4 cut(s)	136, 156, 354, 360
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	4 cut(s)	83, 122, 302, 372
TaiI	ACGT	1 cut(s)	26
TasI	AATT	4 cut(s)	136, 156, 354, 360
TatI	WGTACW	1 cut(s)	198
TscAI	CASTG	3 cut(s)	53, 240, 307
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	53, 240, 307
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.