Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

78228381 .. 78228605

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTGGACTTCGACCTCTTCAGCCTCAGCGGCGACATGAACATCTCCTGCCACCACGCGCGCATCGTCTACGACCTCACCTACTACCGCTTTGAGATGGAGGTCCTCGAGAAGCGCGGCTGCCTCTTGGAGGGGGTACTTCACCTCCTGAAAACCTTCCAGTCAAGCTCGATTCACAGGATCTGCTTCAGATTAGGGATAAAGAGTTTTACTTTTTGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

74

Amino Acids

8.69

Weight (kDa)

6.88

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	3 cut(s)	59, 61, 117
AciI	CCGC	3 cut(s)	30, 88, 117
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	4, 172
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	130
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AlwI	GGATC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	3 cut(s)	61, 63, 117
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	70, 134
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	31, 118, 121
BlsI	GCNGC	3 cut(s)	32, 119, 122
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	160
BsePI	GCGCGC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	3 cut(s)	59, 61, 117
BsiHKCI	CYCGRG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	30, 88, 117
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	3 cut(s)	59, 61, 117
BspPI	GGATC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	160
BssHII	GCGCGC	1 cut(s)	59
BssMI	GATC	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstFNI	CGCG	3 cut(s)	59, 61, 117
BstHHI	GCGC	3 cut(s)	61, 63, 117
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstUI	CGCG	3 cut(s)	59, 61, 117
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	183
CfoI	GCGC	3 cut(s)	61, 63, 117
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	24, 120, 168
CviKI_1	RGCY	3 cut(s)	24, 120, 168
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	4, 172
Eco88I	CYCGRG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	103
FaeI	CATG	1 cut(s)	40
FaiI	YATR	1 cut(s)	38
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	31, 118, 121
Fsp4HI	GCNGC	3 cut(s)	31, 118, 121
FspBI	CTAG	1 cut(s)	223
GlaI	GCGC	3 cut(s)	60, 62, 116
GluI	GCNGC	3 cut(s)	31, 118, 121
HhaI	GCGC	3 cut(s)	61, 63, 117
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	3 cut(s)	59, 61, 115
HinP1I	GCGC	3 cut(s)	59, 61, 115
HinfI	GANTC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	70, 134
Hpy166II	GTNNAC	2 cut(s)	7, 70
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	109, 148
Hpy8I	GTNNAC	2 cut(s)	7, 70
HpyAV	CCTTC	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	3 cut(s)	59, 61, 115
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	61, 161, 163, 173
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	223
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	10
MflI	RGATCY	1 cut(s)	180
MnlI	CCTC	8 cut(s)	26, 35, 86, 94, 116, 124, 134, 155
MroXI	GAANNNNTTC	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	30
MvnI	CGCG	3 cut(s)	59, 61, 117
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	107
PauI	GCGCGC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	32, 119, 122
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	180
PteI	GCGCGC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SatI	GCNGC	3 cut(s)	31, 118, 121
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	7 cut(s)	18, 78, 83, 105, 147, 158, 170
SfaNI	GCATC	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SsiI	CCGC	3 cut(s)	30, 88, 117
SspMI	CTAG	1 cut(s)	223
TaqI	TCGA	3 cut(s)	12, 108, 170
TauI	GCSGC	2 cut(s)	33, 120
TfiI	GAWTC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.