Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

2309609 .. 2310983

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTACAGCCGTTGGAAGCGGGAGCGATGTAGAGGTTGGATTTGCGAAGCTCCAAGGTGAGGATTTCGAGTACTATATGCAGTCTTACTCCATTATTCTCGGCCGGAATTCTAAGAAATCGACCGTCGACGTCGACCTCTCATCTCTCGGCGGTGGGATGAACATTTCTCGCAACCACGCTCGGATCTTCTATGACTTCACTAGACGACGCTTCTCTCTCGAGGTACTTGGCAAAAATGGCTGCTTCGTTGAAGGTGTCCTCCATCTCCCTGGGAACCCCAACGTCAAGCTCGATTCACAGGACCTTTTGCAGATTGGTGACAAGGAGTTCTACTTCCTGCTTCCGGTTTGGAGTATCCTAGGCGGTCCATTGGGACCCAGGCACCACGTCTTAGGGAAGGCTACTGTTGTTCCGTACCATAATTATCATTCGGGTCCAGGTTCCGGGTCGGGTAAGAATGGCGTCCGGAGTAGAGAGTTGTATGAGTACGATGATGAAGACGACGATGAAGAGGAGGATATCAGAGGCAGTGGAAAGAAAACATGGAGAGATGGACATGAAGGAGTATATGCCTCTGGAGAGAAGAAGAGAGAGGGAAGATCAAAGGCAGATCGTGAAGCTGATGATCAACAATTTTTGCAGCTAATGCATGGTAGTGGTTGGTCTGTGACAGATATTAAAGGAGTATGGAAACGTATGGCATCACAGTCGAGTAAGAAGATACCTATCACAAGAAGACTGGGCTATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0080086 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

251

Amino Acids

27.98

Weight (kDa)

6.72

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	33 - 107	2e-10	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	2 cut(s)	129, 135
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	3 cut(s)	21, 153, 366
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	132, 465
AfaI	GTAC	4 cut(s)	74, 228, 419, 491
AfiI	CCNNNNNNNGG	3 cut(s)	61, 346, 446
AgsI	TTSAA	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	3 cut(s)	271, 380, 439
AluBI	AGCT	4 cut(s)	52, 292, 623, 646
AluI	AGCT	4 cut(s)	52, 292, 623, 646
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	468
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	243, 643
ApoI	RAATTY	1 cut(s)	109
AspA2I	CCTAGG	1 cut(s)	361
AspS9I	GGNCC	4 cut(s)	304, 368, 377, 437
AsuC2I	CCSGG	1 cut(s)	448
AsuHPI	GGTGA	2 cut(s)	71, 332
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	4 cut(s)	304, 368, 377, 437
AvrII	CCTAGG	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	384
BbsI	GAAGAC	2 cut(s)	507, 745
BbvI	GCAGC	2 cut(s)	230, 655
BccI	CCATC	2 cut(s)	273, 548
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	3 cut(s)	273, 382, 441
BciVI	GTATCC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	448
BfaI	CTAG	2 cut(s)	204, 362
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	2 cut(s)	244, 644
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	2 cut(s)	245, 645
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	4 cut(s)	273, 382, 441, 448
Bme18I	GGWCC	4 cut(s)	304, 368, 377, 437
BmeT110I	CYCGRG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	4 cut(s)	304, 368, 377, 437
BmiI	GGNNCC	6 cut(s)	278, 378, 379, 386, 438, 445
BmrFI	CCNGG	4 cut(s)	273, 382, 441, 448
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	2 cut(s)	507, 745
BpmI	CTGGAG	1 cut(s)	600
BpuMI	CCSGG	1 cut(s)	448
BsaBI	GATNNNNATC	1 cut(s)	728
BsaHI	GRCGYC	2 cut(s)	132, 465
BsaJI	CCNNGG	5 cut(s)	55, 271, 272, 361, 380
BsaWI	WCCGGW	2 cut(s)	346, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 346, 446
Bse1I	ACTGG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	728
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	273, 382, 441
BseDI	CCNNGG	5 cut(s)	55, 271, 272, 361, 380
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	3 cut(s)	61, 346, 446
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	1 cut(s)	530
BseX3I	CGGCCG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	230, 655
Bsh1285I	CGRYCG	2 cut(s)	106, 126
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	384
BsiEI	CGRYCG	2 cut(s)	106, 126
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	106, 347, 447, 469
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	61, 346, 446
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	186, 602, 613, 628
BspACI	CCGC	3 cut(s)	21, 153, 366
BspANI	GGCC	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	468
BspLI	GGNNCC	6 cut(s)	278, 378, 379, 386, 438, 445
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	747
BssECI	CCNNGG	5 cut(s)	55, 271, 272, 361, 380
BssMI	GATC	4 cut(s)	186, 602, 613, 628
BssNI	GRCGYC	2 cut(s)	132, 465
BssT1I	CCWWGG	2 cut(s)	55, 361
Bst2UI	CCWGG	3 cut(s)	273, 382, 441
Bst4CI	ACNGT	3 cut(s)	127, 409, 711
Bst6I	CTCTTC	2 cut(s)	507, 584
BstACI	GRCGYC	2 cut(s)	132, 465
BstAPI	GCANNNNNTGC	1 cut(s)	649
BstDEI	CTNAG	2 cut(s)	114, 394
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	189, 605, 616, 631
BstMBI	GATC	4 cut(s)	186, 602, 613, 628
BstMCI	CGRYCG	2 cut(s)	106, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 649
BstNI	CCWGG	3 cut(s)	273, 382, 441
BstSCI	CCNGG	4 cut(s)	271, 380, 439, 446
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	230, 655
BstV2I	GAAGAC	2 cut(s)	507, 745
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	538
Cfr13I	GGNCC	4 cut(s)	304, 368, 377, 437
CseI	GACGC	2 cut(s)	219, 454
Csp6I	GTAC	4 cut(s)	73, 227, 418, 490
CviAII	CATG	3 cut(s)	546, 560, 653
CviQI	GTAC	4 cut(s)	73, 227, 418, 490
DdeI	CTNAG	2 cut(s)	114, 394
DpnI	GATC	4 cut(s)	188, 604, 615, 630
DpnII	GATC	4 cut(s)	186, 602, 613, 628
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	507, 584
EarI	CTCTTC	2 cut(s)	507, 584
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	55, 361
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	4 cut(s)	304, 368, 377, 437
Eco52I	CGGCCG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	221
EcoO109I	RGGNCCY	2 cut(s)	304, 377
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	271, 380, 439
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	55, 361
EcoT22I	ATGCAT	1 cut(s)	654
ErhI	CCWWGG	2 cut(s)	55, 361
FaeI	CATG	3 cut(s)	549, 563, 656
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	3 cut(s)	545, 559, 652
FauI	CCCGC	1 cut(s)	14
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	129, 135
Fnu4HI	GCNGC	2 cut(s)	244, 644
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	244, 644
FspBI	CTAG	2 cut(s)	204, 362
GluI	GCNGC	2 cut(s)	244, 644
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	4 cut(s)	106, 347, 447, 469
HgaI	GACGC	2 cut(s)	219, 454
Hin1I	GRCGYC	2 cut(s)	132, 465
Hin1II	CATG	3 cut(s)	549, 563, 656
HincII	GTYRAC	2 cut(s)	130, 136
HindII	GTYRAC	2 cut(s)	130, 136
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	4 cut(s)	106, 347, 447, 469
HphI	GGTGA	2 cut(s)	71, 332
Hpy166II	GTNNAC	2 cut(s)	130, 136
Hpy188I	TCNGA	2 cut(s)	186, 527
Hpy188III	TCNNGA	4 cut(s)	221, 469, 579, 617
Hpy8I	GTNNAC	2 cut(s)	130, 136
Hpy99I	CGWCG	5 cut(s)	131, 134, 137, 213, 509
HpyAV	CCTTC	3 cut(s)	248, 394, 557
HpyCH4III	ACNGT	3 cut(s)	127, 409, 711
HpyCH4IV	ACGT	4 cut(s)	132, 285, 390, 697
HpyCH4V	TGCA	4 cut(s)	82, 313, 643, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 649
HpyF3I	CTNAG	2 cut(s)	114, 394
HpySE526I	ACGT	4 cut(s)	132, 285, 390, 697
Hsp92I	GRCGYC	2 cut(s)	132, 465
Hsp92II	CATG	3 cut(s)	549, 563, 656
KflI	GGGWCCC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	186, 602, 613, 628
LmnI	GCTCC	2 cut(s)	24, 57
Lsp1109I	GCAGC	2 cut(s)	230, 655
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	2 cut(s)	204, 362
MaeII	ACGT	4 cut(s)	132, 285, 390, 697
MaeIII	GTNAC	2 cut(s)	320, 670
MalI	GATC	4 cut(s)	188, 604, 615, 630
MboI	GATC	4 cut(s)	186, 602, 613, 628
MboII	GAAGA	8 cut(s)	181, 512, 524, 598, 601, 612, 733, 750
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	109, 424, 635
MmeI	TCCRAC	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	654
MroI	TCCGGA	1 cut(s)	468
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	4 cut(s)	106, 347, 447, 469
MspR9I	CCNGG	4 cut(s)	273, 382, 441, 448
MvaI	CCWGG	3 cut(s)	273, 382, 441
MwoI	GCNNNNNNNGC	2 cut(s)	240, 649
NciI	CCSGG	1 cut(s)	448
NdeII	GATC	4 cut(s)	186, 602, 613, 628
NlaIII	CATG	3 cut(s)	549, 563, 656
NlaIV	GGNNCC	6 cut(s)	278, 378, 379, 386, 438, 445
NmeAIII	GCCGAG	2 cut(s)	81, 129
NmuCI	GTSAC	2 cut(s)	320, 670
NsiI	ATGCAT	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	221
PasI	CCCWGGG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	245, 645
PpuMI	RGGWCCY	2 cut(s)	304, 377
Psp5II	RGGWCCY	2 cut(s)	304, 377
Psp6I	CCWGG	3 cut(s)	271, 380, 439
PspGI	CCWGG	3 cut(s)	271, 380, 439
PspN4I	GGNNCC	6 cut(s)	278, 378, 379, 386, 438, 445
PspPI	GGNCC	4 cut(s)	304, 368, 377, 437
PspPPI	RGGWCCY	2 cut(s)	304, 377
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	4 cut(s)	74, 228, 419, 491
RsaNI	GTAC	4 cut(s)	73, 227, 418, 490
RseI	CAYNNNNRTG	1 cut(s)	657
SalI	GTCGAC	2 cut(s)	128, 134
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	2 cut(s)	244, 644
Sau3AI	GATC	4 cut(s)	186, 602, 613, 628
Sau96I	GGNCC	4 cut(s)	304, 368, 377, 437
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	273, 382, 441, 448
SfaNI	GCATC	1 cut(s)	713
SfcI	CTRYAG	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	221
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	4 cut(s)	304, 368, 377, 437
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	109, 424, 635
SsiI	CCGC	3 cut(s)	21, 153, 366
SspMI	CTAG	2 cut(s)	204, 362
StyD4I	CCNGG	4 cut(s)	271, 380, 439, 446
StyI	CCWWGG	2 cut(s)	55, 361
TaaI	ACNGT	3 cut(s)	127, 409, 711
TaiI	ACGT	4 cut(s)	135, 288, 393, 700
TaqI	TCGA	7 cut(s)	69, 122, 129, 135, 222, 294, 713
TasI	AATT	3 cut(s)	109, 424, 635
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	2 cut(s)	320, 670
TseI	GCWGC	2 cut(s)	243, 643
Tsp45I	GTSAC	2 cut(s)	320, 670
TspDTI	ATGAA	4 cut(s)	176, 513, 525, 576
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	4 cut(s)	304, 368, 377, 437
XapI	RAATTY	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	221
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	129, 135
XspI	CTAG	2 cut(s)	204, 362
ZraI	GACGTC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.