Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8060674.1

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 361

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8060674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgtcatctttagagccgagatccttggagctgttggatggtcgtcgaagggattctggagcagatctaggtcatcagggattcggaaatggacctctgattgggcgcggtggtggtaggagactaggagccacgaatggcatggaggctttttgcattggtacgatagtccaccactttttgcacatcttctacaacctcacccgccgccgcttcgcgctggaggtcatcaggaagaatggctgcctcgtggttgtccaccttctcgaaaaccttccggtcaagctcgattcgcaagatctgcttcagcttggggataaagggttttactttttgttgccgataaggagtactctgggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

9.58

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	108, 218
AciI	CCGC	4 cut(s)	108, 205, 208, 211
AclWI	GGATC	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	163, 352
AfiI	CCNNNNNNNGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	31, 286, 310
AluI	AGCT	3 cut(s)	31, 286, 310
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	243
Asp700I	GAANNNNTTC	2 cut(s)	52, 273
AspLEI	GCGC	2 cut(s)	108, 220
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BauI	CACGAG	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	68, 125
BglII	AGATCT	2 cut(s)	64, 298
BisI	GCNGC	3 cut(s)	208, 211, 244
BlsI	GCNGC	3 cut(s)	209, 212, 245
BmcAI	AGTACT	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	130
BpmI	CTGGAG	2 cut(s)	78, 242
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	108, 218
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	20, 64, 298
BspACI	CCGC	4 cut(s)	108, 205, 208, 211
BspFNI	CGCG	2 cut(s)	108, 218
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	20, 64, 298
BssSI	CACGAG	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	108, 218
BstHHI	GCGC	2 cut(s)	108, 220
BstKTI	GATC	3 cut(s)	23, 67, 301
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	20, 64, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 301
BstUI	CGCG	2 cut(s)	108, 218
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	3 cut(s)	20, 64, 298
BstYI	RGATCY	3 cut(s)	20, 64, 298
BtsCI	GGATG	1 cut(s)	43
CfoI	GCGC	2 cut(s)	108, 220
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	162, 351
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	7 cut(s)	16, 31, 131, 149, 243, 286, 310
CviKI_1	RGCY	7 cut(s)	16, 31, 131, 149, 243, 286, 310
CviQI	GTAC	2 cut(s)	162, 351
DpnI	GATC	3 cut(s)	22, 66, 300
DpnII	GATC	3 cut(s)	20, 64, 298
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	208, 211, 244
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	208, 211, 244
FspBI	CTAG	2 cut(s)	68, 125
GlaI	GCGC	2 cut(s)	107, 219
GluI	GCNGC	3 cut(s)	208, 211, 244
GsuI	CTGGAG	2 cut(s)	78, 242
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	2 cut(s)	108, 220
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	2 cut(s)	106, 218
HinP1I	GCGC	2 cut(s)	106, 218
HinfI	GANTC	3 cut(s)	53, 81, 290
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	172, 259
Hpy188I	TCNGA	2 cut(s)	86, 99
Hpy188III	TCNNGA	3 cut(s)	57, 232, 266
Hpy8I	GTNNAC	2 cut(s)	172, 259
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	42, 272, 284
HpyCH4V	TGCA	2 cut(s)	156, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 301
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	2 cut(s)	106, 218
Kzo9I	GATC	3 cut(s)	20, 64, 298
LmnI	GCTCC	3 cut(s)	28, 59, 128
LpnPI	CCDG	6 cut(s)	42, 62, 206, 217, 291, 341
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	68, 125
MalI	GATC	3 cut(s)	22, 66, 300
MboI	GATC	3 cut(s)	20, 64, 298
MboII	GAAGA	2 cut(s)	181, 247
MflI	RGATCY	3 cut(s)	20, 64, 298
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	105, 139, 209, 217, 257
MroXI	GAANNNNTTC	2 cut(s)	52, 273
MspI	CCGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	108, 218
MwoI	GCNNNNNNNGC	2 cut(s)	292, 301
NdeII	GATC	3 cut(s)	20, 64, 298
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	52, 273
PfeI	GAWTC	3 cut(s)	53, 81, 290
PkrI	GCNGC	3 cut(s)	209, 212, 245
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	3 cut(s)	20, 64, 298
RsaI	GTAC	2 cut(s)	163, 352
RsaNI	GTAC	2 cut(s)	162, 351
SatI	GCNGC	3 cut(s)	208, 211, 244
Sau3AI	GATC	3 cut(s)	20, 64, 298
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	352
SetI	ASST	9 cut(s)	33, 73, 97, 201, 228, 264, 276, 288, 312
SinI	GGWCC	1 cut(s)	92
SsiI	CCGC	4 cut(s)	108, 205, 208, 211
SspMI	CTAG	2 cut(s)	68, 125
StyI	CCWWGG	1 cut(s)	24
TaqI	TCGA	3 cut(s)	46, 267, 288
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	2 cut(s)	210, 213
TfiI	GAWTC	3 cut(s)	53, 81, 290
TseI	GCWGC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmnI	GAANNNNTTC	2 cut(s)	52, 273
XspI	CTAG	2 cut(s)	68, 125
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.