RchiOBHm_Chr3g0480971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001537
Physical Location & Seq
Forward (+)
26920255 .. 26920769
515 bp
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UTR
Exon/CDS
Intron
PRQ44596

Sequence Viewer

Length: 207 bp
ATGGCGCAAGTTAGCATGTCCAGGGCTTTCTTCTTTGTCCAGATCTTAGTCTTGGCCCTTGTCGCTGCATCCGTCTCTGCTCAGGAGGGTTCTCCGGCACCAGCACCCGCGCCCATGGACGCCGGAGAGGCTTACTCGCTGCCGGTAAGCGGCGCCCTTATCGGAGCGTCGCTTGTGGTCTCACTGTTTTCCTTGTTCAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

6.92

Weight (kDa)

5.43

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 152
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 108, 150
AcyI GRCGYC 2 cut(s) 120, 153
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 79, 184
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 65, 139
AspLEI GCGC 3 cut(s) 7, 112, 155
AspS9I GGNCC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 97, 152
BbvI GCAGC 2 cut(s) 52, 126
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 79, 184
BfoI RGCGCY 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 42
BisI GCNGC 3 cut(s) 66, 140, 151
BlsI GCNGC 3 cut(s) 67, 141, 152
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 99, 154
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu10I CCTNAGC 1 cut(s) 81
BsaHI GRCGYC 2 cut(s) 120, 153
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 21, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 142
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 114
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 52, 126
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 2 cut(s) 97, 152
BsiSI CCGG 3 cut(s) 95, 123, 143
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 79, 184
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 2 cut(s) 108, 150
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 99, 154
BspT107I GGYRCC 2 cut(s) 97, 152
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 21, 114
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 2 cut(s) 120, 153
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 186
BstACI GRCGYC 2 cut(s) 120, 153
BstDEI CTNAG 2 cut(s) 46, 81
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 3 cut(s) 7, 112, 155
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 79, 184
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 62, 128
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 52, 126
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 182
CfoI GCGC 3 cut(s) 7, 112, 155
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 2 cut(s) 128, 156
CviAII CATG 2 cut(s) 16, 115
CviJI RGCY 3 cut(s) 26, 56, 131
CviKI_1 RGCY 3 cut(s) 26, 56, 131
DdeI CTNAG 2 cut(s) 46, 81
DinI GGCGCC 1 cut(s) 154
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 19, 118
FaiI YATR 2 cut(s) 17, 116
FatI CATG 2 cut(s) 15, 114
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 66, 140, 151
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 66, 140, 151
GlaI GCGC 3 cut(s) 6, 111, 154
GluI GCNGC 3 cut(s) 66, 140, 151
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 56
HapII CCGG 3 cut(s) 95, 123, 143
HgaI GACGC 2 cut(s) 128, 156
HhaI GCGC 3 cut(s) 7, 112, 155
Hin1I GRCGYC 2 cut(s) 120, 153
Hin1II CATG 2 cut(s) 19, 118
Hin6I GCGC 3 cut(s) 5, 110, 153
HinP1I GCGC 3 cut(s) 5, 110, 153
HpaII CCGG 3 cut(s) 95, 123, 143
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 40, 83
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 128
HpyF3I CTNAG 2 cut(s) 46, 81
Hsp92I GRCGYC 2 cut(s) 120, 153
Hsp92II CATG 2 cut(s) 19, 118
HspAI GCGC 3 cut(s) 5, 110, 153
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 8 cut(s) 7, 34, 53, 68, 108, 114, 136, 156
Lsp1109I GCAGC 2 cut(s) 52, 126
LweI GCATC 1 cut(s) 77
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 22
MflI RGATCY 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 153
MnlI CCTC 2 cut(s) 79, 121
MspI CCGG 3 cut(s) 95, 123, 143
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 62, 128
NarI GGCGCC 1 cut(s) 153
NcoI CCATGG 1 cut(s) 114
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 19, 118
NlaIV GGNNCC 2 cut(s) 99, 154
NspI RCATGY 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 3 cut(s) 67, 141, 152
PluTI GGCGCC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 99, 154
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 42
SatI GCNGC 3 cut(s) 66, 140, 151
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 22
SfaNI GCATC 1 cut(s) 77
SfoI GGCGCC 1 cut(s) 154
SsiI CCGC 2 cut(s) 108, 150
SspDI GGCGCC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 186
TauI GCSGC 1 cut(s) 153
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 65, 139
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 189
XceI RCATGY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.