Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

5076048 .. 5077886

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG037800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTCTGCCGTCGCCGTCGACCTCGAAGAAGACCTCCGAAGCACCGCCGCCACGCGAAGAAGACCTCCAAAGCTTCGCAGCCACATGAGGAAGATCTCCAATTCCAGGCTCCGCCGCTACGCGACATGCACTATGATTCCAAGCAGTGGCGACCCGACCCTGCTATCAAGCTACCCCAGCAAAGGAAGCCATATGATTTGAATTCGAAAATGGGTTTGGTTAGGCAGCAGAGGCAAGATGACGGTGGACCTATTGAGCTGAGGCATTATGCAGTGGCGATCAGGGGCGGTGGTGGTAGTGGGAAGAAGATGAGGGAAGGGTATGAGGGTTATGGGTACAGTGGTGGGCTAGGTTCTGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGGAGTCGCTGGAGTGGCGGCCGACAAAGGATTGGGAGTGGGGAGGGGAGTCGACCGGGCTAAGGATAGGGGTGGACTGAAAAGTCGTAGTGGTCTTCTCACCGTTGTGGGAGTCACGGGAGGGGCTTTGGACGTAGTAGACTGGGCGATAGGGGAATTGGGTCGGGGACGATGGTCTGCACTAATGGCGGAGTATGCCTACACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.65

Weight (kDa)

10.38

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	3 cut(s)	19, 441, 528
AccII	CGCG	2 cut(s)	56, 123
AciI	CCGC	7 cut(s)	46, 49, 113, 116, 288, 407, 578
AclWI	GGATC	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	4 cut(s)	106, 147, 183, 451
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	3 cut(s)	74, 172, 259
AluI	AGCT	3 cut(s)	74, 172, 259
AlwI	GGATC	1 cut(s)	367
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	79, 226
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	368
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	3 cut(s)	37, 68, 476
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	91, 238
BccI	CCATC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	446
BfaI	CTAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	5 cut(s)	49, 80, 116, 227, 408
BlsI	GCNGC	5 cut(s)	50, 81, 117, 228, 409
Bme1390I	CCNGG	2 cut(s)	107, 446
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	2 cut(s)	111, 367
BmrFI	CCNGG	2 cut(s)	107, 446
BmrI	ACTGGG	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	562
BpiI	GAAGAC	3 cut(s)	37, 68, 476
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	260, 450
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 147, 183, 451
Bse1I	ACTGG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	107
BseLI	CCNNNNNNNGG	4 cut(s)	106, 147, 183, 451
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	91, 238
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	56, 123
Bsh1285I	CGRYCG	2 cut(s)	411, 445
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	365
BsiEI	CGRYCG	2 cut(s)	411, 445
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	4 cut(s)	106, 147, 183, 451
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	94, 279, 359
BspACI	CCGC	7 cut(s)	46, 49, 113, 116, 288, 407, 578
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	2 cut(s)	56, 123
BspLI	GGNNCC	2 cut(s)	111, 367
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	536
BssMI	GATC	3 cut(s)	94, 279, 359
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	245, 341, 493
BstBI	TTCGAA	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	260, 450
BstFNI	CGCG	2 cut(s)	56, 123
BstKTI	GATC	3 cut(s)	97, 282, 362
BstMBI	GATC	3 cut(s)	94, 279, 359
BstMCI	CGRYCG	2 cut(s)	411, 445
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 187, 232, 404, 575, 584
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	105, 444
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	56, 123
BstV1I	GCAGC	2 cut(s)	91, 238
BstV2I	GAAGAC	3 cut(s)	37, 68, 476
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BstZI	CGGCCG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	410
BtsI	GCAGTG	2 cut(s)	152, 279
BtsIMutI	CAGTG	3 cut(s)	152, 279, 346
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	86, 127
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	260, 450
DpnI	GATC	3 cut(s)	96, 281, 361
DpnII	GATC	3 cut(s)	94, 279, 359
DrdI	GACNNNNNNGTC	1 cut(s)	471
DseDI	GACNNNNNNGTC	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	408
EagI	CGGCCG	1 cut(s)	408
EciI	GGCGGA	2 cut(s)	102, 593
EclXI	CGGCCG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	248
Eco52I	CGGCCG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	89, 130
FaiI	YATR	9 cut(s)	87, 128, 135, 193, 195, 270, 324, 333, 585
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	2 cut(s)	85, 126
FauNDI	CATATG	1 cut(s)	193
FblI	GTMKAC	3 cut(s)	19, 441, 528
Fnu4HI	GCNGC	5 cut(s)	49, 80, 116, 227, 408
Fsp4HI	GCNGC	5 cut(s)	49, 80, 116, 227, 408
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	5 cut(s)	49, 80, 116, 227, 408
GsaI	CCCAGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	2 cut(s)	89, 130
HincII	GTYRAC	2 cut(s)	20, 442
HindII	GTYRAC	2 cut(s)	20, 442
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	4 cut(s)	137, 393, 438, 501
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	5 cut(s)	20, 248, 442, 464, 529
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	5 cut(s)	20, 248, 442, 464, 529
Hpy99I	CGWCG	2 cut(s)	15, 21
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	3 cut(s)	245, 341, 493
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	130, 272, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 187, 232, 404, 575, 584
HpyF3I	CTNAG	2 cut(s)	260, 450
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	89, 130
Kzo9I	GATC	3 cut(s)	94, 279, 359
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	92, 119, 174, 191, 268, 342, 384, 458, 517
Lsp1109I	GCAGC	2 cut(s)	91, 238
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	96, 281, 361
MboI	GATC	3 cut(s)	94, 279, 359
MboII	GAAGA	8 cut(s)	39, 42, 70, 73, 104, 316, 319, 476
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	3 cut(s)	101, 202, 545
MlyI	GAGTC	3 cut(s)	402, 447, 510
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	2 cut(s)	107, 446
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	56, 123
MwoI	GCNNNNNNNGC	6 cut(s)	178, 187, 232, 404, 575, 584
NciI	CCSGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	94, 279, 359
NlaIII	CATG	2 cut(s)	89, 130
NlaIV	GGNNCC	2 cut(s)	111, 367
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	206
OliI	CACNNNNGTG	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	50, 81, 117, 228, 409
PleI	GAGTC	3 cut(s)	401, 446, 509
PpsI	GAGTC	3 cut(s)	401, 446, 509
PshAI	GACNNNNGTC	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	111, 367
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	494
SalI	GTCGAC	2 cut(s)	18, 440
SatI	GCNGC	5 cut(s)	49, 80, 116, 227, 408
Sau3AI	GATC	3 cut(s)	94, 279, 359
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	3 cut(s)	402, 447, 510
ScrFI	CCNGG	2 cut(s)	107, 446
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	9 cut(s)	25, 37, 68, 76, 174, 253, 261, 355, 525
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	3 cut(s)	101, 202, 545
SsiI	CCGC	7 cut(s)	46, 49, 113, 116, 288, 407, 578
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	105, 444
TaaI	ACNGT	3 cut(s)	245, 341, 493
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	4 cut(s)	19, 25, 206, 441
TasI	AATT	3 cut(s)	101, 202, 545
TauI	GCSGC	3 cut(s)	51, 118, 410
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	3 cut(s)	152, 279, 346
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	2 cut(s)	79, 226
Tsp45I	GTSAC	1 cut(s)	502
TspRI	CASTG	3 cut(s)	152, 279, 346
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	3 cut(s)	19, 441, 528
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.