Rh1AG105700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001537
Physical Location & Seq
Forward (+)
18397298 .. 18397641
344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG105700.1

Sequence Viewer

Length: 264 bp
ATGGATGCAGTGGTGGGCTGGGTTCTAGATCGGGCACCAAGTCAGCAATTGGAATTGGGATACAATTTGTTTTTTGAATCATATAATGGCGGAAGAGTCGCGGGAGTGGCGGCCGACAAGGGATTGGGAGTGGTGAGGGGAGTCAACTGGGCTGAGGATGAGGCTGGACTGAAAAGACGTGGTGGTCTTCTCGCCGTTGTGGGAGTCGCAGGAGAGGCTTTGGATGTAGTAGATTGGGCGACAGGGGAATCGGGTCGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.05

Weight (kDa)

4.58

Isoelectric Point (pI)

17.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 1 cut(s) 101
AciI CCGC 3 cut(s) 90, 101, 110
AcoI YGGCCR 1 cut(s) 111
AgsI TTSAA 1 cut(s) 77
AjiI CACGTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 179
BbvCI CCTCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 179
BciVI GTATCC 1 cut(s) 53
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 152
BseGI GGATG 3 cut(s) 10, 163, 229
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 37
BseX3I CGGCCG 1 cut(s) 111
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 114
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 3 cut(s) 90, 101, 110
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 152
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 10, 163, 229
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 107, 215
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 179
BstZI CGGCCG 1 cut(s) 111
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 113
BtrI CACGTC 1 cut(s) 179
BtsCI GGATG 3 cut(s) 10, 163, 229
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
CviJI RGCY 5 cut(s) 18, 113, 152, 164, 218
CviKI_1 RGCY 5 cut(s) 18, 113, 152, 164, 218
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DrdI GACNNNNNNGTC 1 cut(s) 183
DseDI GACNNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 111
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 111
Eco52I CGGCCG 1 cut(s) 111
FaiI YATR 2 cut(s) 82, 84
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 17, 170, 236
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 5 cut(s) 77, 96, 141, 204, 248
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 215
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 178
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 4, 133, 150, 195, 228
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 178
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 105, 179
MfeI CAATTG 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 3 cut(s) 47, 53, 64
MlyI GAGTC 3 cut(s) 105, 150, 213
MnlI CCTC 4 cut(s) 129, 148, 154, 208
MunI CAATTG 1 cut(s) 47
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 107, 215
NdeII GATC 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 77, 248
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 3 cut(s) 104, 149, 212
PpsI GAGTC 3 cut(s) 104, 149, 212
PspFI CCCAGC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 36
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 3 cut(s) 105, 150, 213
SduI GDGCHC 1 cut(s) 37
SetI ASST 1 cut(s) 181
Sse9I AATT 3 cut(s) 47, 53, 64
SsiI CCGC 3 cut(s) 90, 101, 110
SspMI CTAG 1 cut(s) 26
TaiI ACGT 1 cut(s) 181
TasI AATT 3 cut(s) 47, 53, 64
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 77, 248
TscAI CASTG 1 cut(s) 15
TspRI CASTG 1 cut(s) 15
XbaI TCTAGA 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.