Prupe.7G068100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001537
Physical Location & Seq
Reverse (-)
10649465 .. 10649665
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G068100.1

Sequence Viewer

Length: 201 bp
ATGGCGCAAGTTAGCATCTCCGGAGCCTTCTTCTTCGTCCAGATGCTGGTCTTGGCTGCGATGGTGTCGGCTCAGGAGAGCGCCCCGGCGCCGTCCCCGATGGATGCTGGAGCGGCTTACTCTTTGCCTGTGAACAGCGTAGTTGTCGGAGCATCGCTTCTGGTCTCATTTTGCGCCTTGTTCAAACGCTACCTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.84

Weight (kDa)

5.82

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 20
AciI CCGC 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 4 cut(s) 7, 83, 91, 176
AsuC2I CCSGG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 55, 94
BceAI ACGGC 1 cut(s) 76
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 169
BfoI RGCGCY 2 cut(s) 84, 92
BisI GCNGC 2 cut(s) 57, 114
BlsI GCNGC 2 cut(s) 58, 115
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 25, 90
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 4 cut(s) 24, 33, 94, 161
BpmI CTGGAG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 21, 86
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 79
Bso31I GGTCTC 1 cut(s) 169
Bsp13I TCCGGA 1 cut(s) 20
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 25, 90
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 2 cut(s) 84, 92
BstHHI GCGC 4 cut(s) 7, 83, 91, 176
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 43
BtgZI GCGATG 2 cut(s) 74, 138
BtsCI GGATG 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 4 cut(s) 7, 83, 91, 176
CviJI RGCY 4 cut(s) 26, 56, 71, 116
CviKI_1 RGCY 4 cut(s) 26, 56, 71, 116
DdeI CTNAG 1 cut(s) 72
DinI GGCGCC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
FaqI GGGAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 57, 114
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 57, 114
GlaI GCGC 4 cut(s) 6, 82, 90, 175
GluI GCNGC 2 cut(s) 57, 114
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 2 cut(s) 84, 92
HapII CCGG 2 cut(s) 21, 86
HhaI GCGC 4 cut(s) 7, 83, 91, 176
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 4 cut(s) 5, 81, 89, 174
HinP1I GCGC 4 cut(s) 5, 81, 89, 174
HpaII CCGG 2 cut(s) 21, 86
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 3 cut(s) 21, 40, 74
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 4 cut(s) 5, 81, 89, 174
KasI GGCGCC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 20
LmnI GCTCC 3 cut(s) 23, 110, 149
LpnPI CCDG 8 cut(s) 32, 34, 53, 59, 93, 99, 141, 146
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 4 cut(s) 24, 33, 94, 161
MbiI CCGCTC 1 cut(s) 113
MboII GAAGA 2 cut(s) 22, 25
MluCI AATT 1 cut(s) 196
Mly113I GGCGCC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 127
MroI TCCGGA 1 cut(s) 20
MseI TTAA 1 cut(s) 199
MspI CCGG 2 cut(s) 21, 86
MspR9I CCNGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 25, 90
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 2 cut(s) 58, 115
PluTI GGCGCC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 25, 90
PstNI CAGNNNCTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 199
SatI GCNGC 2 cut(s) 57, 114
ScrFI CCNGG 1 cut(s) 86
SetI ASST 1 cut(s) 195
SfaNI GCATC 4 cut(s) 24, 33, 94, 161
SfoI GGCGCC 1 cut(s) 90
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 113
SspDI GGCGCC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 84
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TseI GCWGC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.