Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

24967959 .. 24973243

Gene Structure 5285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGCAAGTTAGCATGTCCAGGGCTTTCTTCTTTGTCCAGATCTTAGTCTTGGCCCTTGTCGCTGCATCCGTCTCTGCTCAGGAGGGTTCTCCGGCACCAGCACCCGCGCCCATGGACGCCGGAGAGGCTTACTCGCTGCCGGTGCTGGTCTTAGTCCTCGCGGCGGCAACTGTCTCGGCTCAGGAGAGCGCTCCGGCACCGGCTCCCATGGATGCTGGAGCGGCTTACTCTTTGCCAGTCAATGGTGCGGTTATTGGAGCCTCGATTGCGGTCTCATTCTTCTCCTTGTTCAAGCACTACTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

10.37

Weight (kDa)

4.5

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 199
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	224
AccII	CGCG	2 cut(s)	110, 164
AciI	CCGC	6 cut(s)	108, 164, 167, 224, 251, 272
AcyI	GRCGYC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	2 cut(s)	166, 245
AgsI	TTSAA	2 cut(s)	295, 307
AjnI	CCWGG	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	79, 181, 280
Aor51HI	AGCGCT	1 cut(s)	193
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	65, 139
AspLEI	GCGC	3 cut(s)	7, 112, 194
AspS9I	GGNCC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	97, 199
BbvI	GCAGC	2 cut(s)	52, 126
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	79, 181, 280
BfoI	RGCGCY	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	5 cut(s)	66, 140, 165, 168, 225
BlsI	GCNGC	5 cut(s)	67, 141, 166, 169, 226
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	99, 201, 207, 262
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	77, 205
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	2 cut(s)	81, 183
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	21, 114, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 245
Bse118I	RCCGGY	2 cut(s)	142, 202
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	21, 114, 210
BseGI	GGATG	2 cut(s)	68, 220
BseLI	CCNNNNNNNGG	2 cut(s)	166, 245
BseMII	CTCAG	2 cut(s)	95, 197
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	52, 126
Bsh1236I	CGCG	2 cut(s)	110, 164
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	2 cut(s)	97, 199
BsiSI	CCGG	5 cut(s)	95, 123, 143, 197, 203
BslI	CCNNNNNNNGG	2 cut(s)	166, 245
BsmAI	GTCTC	3 cut(s)	79, 181, 280
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	2 cut(s)	114, 210
BspACI	CCGC	6 cut(s)	108, 164, 167, 224, 251, 272
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	94, 196
BspFNI	CGCG	2 cut(s)	110, 164
BspLI	GGNNCC	4 cut(s)	99, 201, 207, 262
BspT107I	GGYRCC	2 cut(s)	97, 199
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	2 cut(s)	142, 202
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	2 cut(s)	142, 202
BssECI	CCNNGG	3 cut(s)	21, 114, 210
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	114, 210
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	4 cut(s)	46, 81, 154, 183
BstDSI	CCRYGG	2 cut(s)	114, 210
BstF5I	GGATG	2 cut(s)	68, 220
BstFNI	CGCG	2 cut(s)	110, 164
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	3 cut(s)	7, 112, 194
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	3 cut(s)	79, 181, 280
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 128, 145, 224, 269
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	2 cut(s)	110, 164
BstV1I	GCAGC	2 cut(s)	52, 126
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	114, 210
BtsCI	GGATG	2 cut(s)	68, 220
CfoI	GCGC	3 cut(s)	7, 112, 194
Cfr10I	RCCGGY	2 cut(s)	142, 202
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	128
CviAII	CATG	3 cut(s)	16, 115, 211
CviJI	RGCY	7 cut(s)	26, 56, 131, 182, 206, 227, 263
CviKI_1	RGCY	7 cut(s)	26, 56, 131, 182, 206, 227, 263
DdeI	CTNAG	4 cut(s)	46, 81, 154, 183
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	114, 210
Eco31I	GGTCTC	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	114, 210
ErhI	CCWWGG	2 cut(s)	114, 210
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	3 cut(s)	19, 118, 214
FaiI	YATR	3 cut(s)	17, 116, 212
FalI	AAGNNNNNCTT	1 cut(s)	287
FatI	CATG	3 cut(s)	15, 114, 210
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	66, 140, 165, 168, 225
FokI	GGATG	2 cut(s)	55, 227
Fsp4HI	GCNGC	5 cut(s)	66, 140, 165, 168, 225
GlaI	GCGC	3 cut(s)	6, 111, 193
GluI	GCNGC	5 cut(s)	66, 140, 165, 168, 225
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	5 cut(s)	95, 123, 143, 197, 203
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	3 cut(s)	7, 112, 194
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	19, 118, 214
Hin6I	GCGC	3 cut(s)	5, 110, 192
HinP1I	GCGC	3 cut(s)	5, 110, 192
HpaII	CCGG	5 cut(s)	95, 123, 143, 197, 203
Hpy188III	TCNNGA	3 cut(s)	40, 83, 185
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 128, 145, 224, 269
HpyF3I	CTNAG	4 cut(s)	46, 81, 154, 183
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	19, 118, 214
HspAI	GCGC	3 cut(s)	5, 110, 192
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	4 cut(s)	199, 211, 221, 260
Lsp1109I	GCAGC	2 cut(s)	52, 126
LweI	GCATC	2 cut(s)	77, 205
MalI	GATC	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	22, 274
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	4 cut(s)	79, 121, 170, 274
MspI	CCGG	5 cut(s)	95, 123, 143, 197, 203
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	2 cut(s)	110, 164
MwoI	GCNNNNNNNGC	5 cut(s)	62, 128, 145, 224, 269
NcoI	CCATGG	2 cut(s)	114, 210
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	19, 118, 214
NlaIV	GGNNCC	4 cut(s)	99, 201, 207, 262
NmeAIII	GCCGAG	1 cut(s)	158
NspI	RCATGY	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	67, 141, 166, 169, 226
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	4 cut(s)	99, 201, 207, 262
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	42
SatI	GCNGC	5 cut(s)	66, 140, 165, 168, 225
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	77, 205
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	6 cut(s)	108, 164, 167, 224, 251, 272
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	114, 210
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	266
TasI	AATT	1 cut(s)	307
TauI	GCSGC	3 cut(s)	167, 170, 227
TseI	GCWGC	2 cut(s)	65, 139
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.