Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

41018877 .. 41019570

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG311000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAACATCTCCCACCACCATGCGCACATCTTCTACGACCTCACCCGCCGCTGCTTCGTGCTGGAGGTCATCAAGAAGAATGGCTGCCTCGTGGAGGGGATTGTCCACCTCCCCAGAAACCTTCTGGTCAAGTTCGATTCACAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTGTGTTACCGATAAGGATTACTCTGGGTGGATCTATTGAGCCCAGGCATTACGCGATGGCAGTCGGGGGAGGTGGTGGAGGAGTTGCGAGAGTGGCCGCCGATGGAGGAGTGGGAATGGGGAAGGGAGCCGATAGGGCTGAGGACGAGGGTGGACTAAAAAGATCTAGTGGTCTTCTCTCTGTTGTGGGAGTCTCCGAATGGGCTTTCTTGAACTTGCGGCTCGCGGCTCGGAGACTTGAACTTGTGGCGGCTATCTTACTCGGAGATTTGGATTGCTCGGAAGAGACTTGCAGCAGCGGCGGAGGAGGACGAAGAGACTTGAAGGCTGGGTTTGAATGTTCGACTAAGGGATTGAATTTGAAATCTAGAGGGGGATTGAATCATTTGTATGGGATTGAAGGCTGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

196

Amino Acids

20.99

Weight (kDa)

7.7

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AccII	CGCG	2 cut(s)	233, 404
AciI	CCGC	8 cut(s)	46, 49, 276, 397, 404, 428, 477, 480
AclWI	GGATC	2 cut(s)	153, 217
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	8 cut(s)	391, 419, 502, 515, 535, 541, 559, 578
AjnI	CCWGG	1 cut(s)	221
Alw26I	GTCTC	4 cut(s)	376, 406, 458, 489
AlwI	GGATC	2 cut(s)	153, 217
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	51, 84, 471, 474
ApoI	RAATTY	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	38, 71, 483, 486
BccI	CCATC	2 cut(s)	229, 275
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	4 cut(s)	376, 406, 458, 489
BfaI	CTAG	2 cut(s)	345, 546
BglI	GCCNNNNNGGC	1 cut(s)	314
BglII	AGATCT	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	3 cut(s)	273, 300, 498
BseXI	GCAGC	4 cut(s)	38, 71, 483, 486
BseYI	CCCAGC	2 cut(s)	506, 582
Bsh1236I	CGCG	2 cut(s)	233, 404
BshFI	GGCC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	4 cut(s)	376, 406, 458, 489
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	145, 209, 341
BspACI	CCGC	8 cut(s)	46, 49, 276, 397, 404, 428, 477, 480
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	233, 404
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	2 cut(s)	153, 217
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	145, 209, 341
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	456, 487
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	318, 525
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstFNI	CGCG	2 cut(s)	233, 404
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	148, 212, 344
BstMAI	GTCTC	4 cut(s)	376, 406, 458, 489
BstMBI	GATC	3 cut(s)	145, 209, 341
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 314, 477
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	2 cut(s)	233, 404
BstV1I	GCAGC	4 cut(s)	38, 71, 483, 486
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	3 cut(s)	145, 209, 341
BstYI	RGATCY	3 cut(s)	145, 209, 341
BsuRI	GGCC	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	318, 525
DpnI	GATC	3 cut(s)	147, 211, 343
DpnII	GATC	3 cut(s)	145, 209, 341
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	456, 487
EarI	CTCTTC	2 cut(s)	456, 487
EciI	GGCGGA	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 570, 589
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	222
FspAI	RTGCGCAY	1 cut(s)	24
FspBI	CTAG	2 cut(s)	345, 546
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GsaI	CCCAGC	2 cut(s)	510, 586
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	3 cut(s)	137, 369, 559
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	106, 332
Hpy188I	TCNGA	5 cut(s)	156, 376, 411, 443, 460
Hpy188III	TCNNGA	3 cut(s)	73, 388, 546
Hpy8I	GTNNAC	2 cut(s)	106, 332
HpyAV	CCTTC	4 cut(s)	131, 295, 496, 572
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 314, 477
HpyF3I	CTNAG	2 cut(s)	318, 525
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	145, 209, 341
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	47, 110, 127, 128, 188, 208, 235, 492, 568
Lsp1109I	GCAGC	4 cut(s)	38, 71, 483, 486
MaeI	CTAG	2 cut(s)	345, 546
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	3 cut(s)	147, 211, 343
MboI	GATC	3 cut(s)	145, 209, 341
MboII	GAAGA	5 cut(s)	22, 88, 344, 473, 504
MflI	RGATCY	3 cut(s)	145, 209, 341
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	18, 567
MspA1I	CMGCKG	2 cut(s)	51, 477
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	2 cut(s)	233, 404
MwoI	GCNNNNNNNGC	3 cut(s)	272, 314, 477
NdeII	GATC	3 cut(s)	145, 209, 341
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	307
NsbI	TGCGCA	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	137, 559
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	221
PspFI	CCCAGC	2 cut(s)	506, 582
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	3 cut(s)	145, 209, 341
RseI	CAYNNNNRTG	2 cut(s)	18, 567
Sau3AI	GATC	3 cut(s)	145, 209, 341
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	42, 69, 111, 123, 253
SmiMI	CAYNNNNRTG	2 cut(s)	18, 567
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	8 cut(s)	46, 49, 276, 397, 404, 428, 477, 480
SspMI	CTAG	2 cut(s)	345, 546
StyD4I	CCNGG	1 cut(s)	221
TaqI	TCGA	2 cut(s)	135, 521
TasI	AATT	1 cut(s)	535
TauI	GCSGC	6 cut(s)	51, 278, 400, 407, 431, 480
TfiI	GAWTC	2 cut(s)	137, 559
TseI	GCWGC	4 cut(s)	51, 84, 471, 474
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	535
XbaI	TCTAGA	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	345, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.