RLG00000023437

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001537
Physical Location & Seq
Reverse (-)
23748672 .. 23750886
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023437

Sequence Viewer

Length: 558 bp
ATGCATGAGAAAGACTTCAGGTTGCCGAAATCCTTTGGCACCGATTCGGTGAAGCCGTTGTCGGAGAGACCTCTGTCTAAGGAATTGGAGAGGGAGTTGTTGGAGAGGTCAAGGTTATGGGTACAGTGGTGGGCTAGGTTCTGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGTTTGTTTTTTGAATTATATGATGACGGAGGAGTCGTAGGAGTGGCGGCCGACAAGGGATTGGGAGTGGTGAGGGGAGTCGACAGGGCTGAGGATGGGGGTGGACTGAAAAGACGTGGTGGTCTTCTCGCCGTTGCGGGAGTCACGGGAGGGGCTAGACGTAGTAGACTGCGCGACAGAGGAATCGGGTTGGGGACAATGGTCTGCACTAATGGCGGAATCTTAGTCTTGGCCCTTGTCGCTGCATCCGTCTCTGCTCAGGAGGGTTCTCCGGCACCAGCACCCGCGCCCATGGACGCCGGAGCAGCTTACTCGCTGCCGGTAAGCGGCGCCCTTATCGGAGCGTCGCTTGTGGTCTCACTGTTTTCCTTGTTCAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.62

Weight (kDa)

9.51

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 206, 294
AccB1I GGYRCC 4 cut(s) 38, 150, 448, 503
AccI GTMKAC 2 cut(s) 255, 340
AccII CGCG 2 cut(s) 348, 461
AciI CCGC 5 cut(s) 221, 311, 390, 459, 501
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 222
AcyI GRCGYC 2 cut(s) 471, 504
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 2 cut(s) 188, 550
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 1 cut(s) 482
AluI AGCT 1 cut(s) 482
Alw26I GTCTC 3 cut(s) 61, 430, 535
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 222, 405
ApeKI GCWGC 3 cut(s) 416, 479, 490
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 3 cut(s) 348, 463, 506
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 61, 256
BaeGI GKGCMC 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 4 cut(s) 38, 150, 448, 503
BbsI GAAGAC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 403, 477, 491
BccI CCATC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 40, 290
BcgI CGANNNNNNTGC 2 cut(s) 468, 502
BcoDI GTCTC 3 cut(s) 61, 430, 535
BfaI CTAG 2 cut(s) 135, 330
BfoI RGCGCY 1 cut(s) 507
BisI GCNGC 5 cut(s) 222, 417, 480, 491, 502
BlsI GCNGC 5 cut(s) 223, 418, 481, 492, 503
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 4 cut(s) 40, 152, 450, 505
BmsI GCATC 1 cut(s) 428
BoxI GACNNNNGTC 2 cut(s) 73, 374
BpiI GAAGAC 1 cut(s) 290
Bpu10I CCTNAGC 2 cut(s) 264, 432
BsaHI GRCGYC 2 cut(s) 471, 504
BsaI GGTCTC 2 cut(s) 61, 535
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse118I RCCGGY 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 274, 419
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 2 cut(s) 255, 446
BseRI GAGGAG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 403, 477, 491
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 2 cut(s) 348, 461
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 224, 407
BshNI GGYRCC 4 cut(s) 38, 150, 448, 503
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 446, 474, 494
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 3 cut(s) 61, 430, 535
BsmBI CGTCTC 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 224, 407
Bso31I GGTCTC 2 cut(s) 61, 535
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 5 cut(s) 221, 311, 390, 459, 501
BspANI GGCC 2 cut(s) 224, 407
BspCNI CTCAG 2 cut(s) 256, 445
BspFNI CGCG 2 cut(s) 348, 461
BspLI GGNNCC 4 cut(s) 40, 152, 450, 505
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 4 cut(s) 38, 150, 448, 503
BspTNI GGTCTC 2 cut(s) 61, 535
BsrFI RCCGGY 1 cut(s) 493
BssAI RCCGGY 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 2 cut(s) 471, 504
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 126, 537
BstACI GRCGYC 2 cut(s) 471, 504
BstDEI CTNAG 4 cut(s) 78, 264, 397, 432
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 274, 419
BstFNI CGCG 2 cut(s) 348, 461
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 3 cut(s) 348, 463, 506
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 3 cut(s) 61, 430, 535
BstMBI GATC 1 cut(s) 144
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 3 cut(s) 387, 413, 479
BstPAI GACNNNNGTC 2 cut(s) 73, 374
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 2 cut(s) 348, 461
BstV1I GCAGC 3 cut(s) 403, 477, 491
BstV2I GAAGAC 1 cut(s) 290
BstZI CGGCCG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 224, 407
BtgI CCRYGG 1 cut(s) 465
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 2 cut(s) 274, 419
BtsIMutI CAGTG 2 cut(s) 131, 533
CfoI GCGC 3 cut(s) 348, 463, 506
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 2 cut(s) 479, 507
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 5, 466
CviJI RGCY 8 cut(s) 55, 134, 171, 224, 263, 329, 407, 482
CviKI_1 RGCY 8 cut(s) 55, 134, 171, 224, 263, 329, 407, 482
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 4 cut(s) 78, 264, 397, 432
DinI GGCGCC 1 cut(s) 505
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DrdI GACNNNNNNGTC 2 cut(s) 206, 294
DseDI GACNNNNNNGTC 2 cut(s) 206, 294
EaeI YGGCCR 1 cut(s) 222
EagI CGGCCG 1 cut(s) 222
EciI GGCGGA 1 cut(s) 405
EclXI CGGCCG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 2 cut(s) 61, 535
Eco52I CGGCCG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 505
EheI GGCGCC 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 2 cut(s) 8, 469
FaiI YATR 5 cut(s) 6, 118, 193, 195, 467
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 4, 465
FauI CCCGC 2 cut(s) 304, 466
FblI GTMKAC 2 cut(s) 255, 340
Fnu4HI GCNGC 5 cut(s) 222, 417, 480, 491, 502
FokI GGATG 2 cut(s) 281, 406
Fsp4HI GCNGC 5 cut(s) 222, 417, 480, 491, 502
FspBI CTAG 2 cut(s) 135, 330
GlaI GCGC 3 cut(s) 347, 462, 505
GluI GCNGC 5 cut(s) 222, 417, 480, 491, 502
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 2 cut(s) 224, 407
HapII CCGG 3 cut(s) 446, 474, 494
HgaI GACGC 2 cut(s) 479, 507
HhaI GCGC 3 cut(s) 348, 463, 506
Hin1I GRCGYC 2 cut(s) 471, 504
Hin1II CATG 2 cut(s) 8, 469
Hin6I GCGC 3 cut(s) 346, 461, 504
HinP1I GCGC 3 cut(s) 346, 461, 504
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 6 cut(s) 44, 207, 252, 315, 357, 393
HpaII CCGG 3 cut(s) 446, 474, 494
HphI GGTGA 2 cut(s) 61, 256
Hpy166II GTNNAC 3 cut(s) 256, 278, 341
Hpy188I TCNGA 2 cut(s) 64, 515
Hpy188III TCNNGA 2 cut(s) 142, 434
Hpy8I GTNNAC 3 cut(s) 256, 278, 341
Hpy99I CGWCG 1 cut(s) 523
HpyCH4III ACNGT 2 cut(s) 126, 537
HpyCH4IV ACGT 2 cut(s) 289, 334
HpyCH4V TGCA 3 cut(s) 4, 381, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 387, 413, 479
HpyF3I CTNAG 4 cut(s) 78, 264, 397, 432
HpySE526I ACGT 2 cut(s) 289, 334
Hsp92I GRCGYC 2 cut(s) 471, 504
Hsp92II CATG 2 cut(s) 8, 469
HspAI GCGC 3 cut(s) 346, 461, 504
KasI GGCGCC 1 cut(s) 503
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 2 cut(s) 476, 515
LpnPI CCDG 8 cut(s) 4, 127, 244, 419, 459, 465, 487, 507
Lsp1109I GCAGC 3 cut(s) 403, 477, 491
LweI GCATC 1 cut(s) 428
MaeI CTAG 2 cut(s) 135, 330
MaeII ACGT 2 cut(s) 289, 334
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 83, 188
Mly113I GGCGCC 1 cut(s) 504
MlyI GAGTC 3 cut(s) 216, 261, 324
MmeI TCCRAC 2 cut(s) 42, 81
MnlI CCTC 9 cut(s) 81, 84, 99, 197, 240, 259, 317, 347, 430
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 14
MspI CCGG 3 cut(s) 446, 474, 494
MvnI CGCG 2 cut(s) 348, 461
MwoI GCNNNNNNNGC 3 cut(s) 387, 413, 479
NarI GGCGCC 1 cut(s) 504
NcoI CCATGG 1 cut(s) 465
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 8, 469
NlaIV GGNNCC 4 cut(s) 40, 152, 450, 505
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 3 cut(s) 53, 207, 420
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 44, 357, 393
PkrI GCNGC 5 cut(s) 223, 418, 481, 492, 503
PleI GAGTC 3 cut(s) 215, 260, 323
PluTI GGCGCC 1 cut(s) 507
PpsI GAGTC 3 cut(s) 215, 260, 323
PshAI GACNNNNGTC 2 cut(s) 73, 374
PspN4I GGNNCC 4 cut(s) 40, 152, 450, 505
PspPI GGNCC 1 cut(s) 406
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 5 cut(s) 222, 417, 480, 491, 502
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 3 cut(s) 216, 261, 324
SduI GDGCHC 1 cut(s) 153
SetI ASST 8 cut(s) 23, 73, 110, 116, 140, 292, 337, 484
SfaNI GCATC 1 cut(s) 428
SfoI GGCGCC 1 cut(s) 505
Sse9I AATT 2 cut(s) 83, 188
SsiI CCGC 5 cut(s) 221, 311, 390, 459, 501
SspDI GGCGCC 1 cut(s) 503
SspMI CTAG 2 cut(s) 135, 330
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 126, 537
TaiI ACGT 2 cut(s) 292, 337
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 83, 188
TauI GCSGC 2 cut(s) 224, 504
TfiI GAWTC 3 cut(s) 44, 357, 393
TscAI CASTG 2 cut(s) 131, 540
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 416, 479, 490
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 2 cut(s) 216, 412
TspRI CASTG 2 cut(s) 131, 540
XmiI GTMKAC 2 cut(s) 255, 340
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 135, 330
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.