Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

37717068 .. 37719918

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTGGACATCGACCTCTCCAGCCTCGGCGACGGCATGAACATCTCCCACCACCATGCGCACATCTTCTACGACCTCACCCGCCGCTGCTTCGCGCTGGAGGTCATCAAGAAGAATGGCTGCCTCGTGGAGGGGATTGTCCACCTCCCCAGAAACCTTCTGGTCAAGTTCGATTCACAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTGTGTTACCGATAAGGATTACTCTGGGTGGATCTATTAAGCCCAGGCATTACGCGATGGCGGTCGGGGGAGGTGGTGGTAGTTCCTATCTAGCTTTCTTAATTTGTAATGCTTTTGCTATTTTGCATCTTGCTGCTGTTATTCTCAAGTGGAATCGGTCTCTTTCAAGTGGAATCGGTATATGTGACCGGATTCTGGTGAAGACCTCGTTGGTTTCTGGGTCGACCATGTATTTGATTTCGGCGACGTGGCAGAGAATGAGAGGTGGGATTCTGACGGAGGAGGAGAGGAAATCGGCATGGGTTTGGGCGTGCTCGGCGTGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

8.87

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	437
AccII	CGCG	2 cut(s)	95, 269
AciI	CCGC	3 cut(s)	82, 85, 275
AclWI	GGATC	2 cut(s)	189, 253
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	130, 409
AgsI	TTSAA	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	462
AjnI	CCWGG	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	2 cut(s)	189, 253
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	3 cut(s)	87, 120, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	2 cut(s)	61, 97
AsuHPI	GGTGA	2 cut(s)	70, 424
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	3 cut(s)	74, 107, 334
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	85, 88, 121, 348
BlsI	GCNGC	4 cut(s)	86, 89, 122, 349
Bme1390I	CCNGG	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	4, 119
BpuEI	CTTGAG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	25, 257
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 409
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	25, 257
BseLI	CCNNNNNNNGG	2 cut(s)	130, 409
BseRI	GAGGAG	2 cut(s)	509, 512
BseXI	GCAGC	3 cut(s)	74, 107, 334
Bsh1236I	CGCG	2 cut(s)	95, 269
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	538
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	130, 409
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	538
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	181, 245
BspACI	CCGC	3 cut(s)	82, 85, 275
BspANI	GGCC	1 cut(s)	538
BspFNI	CGCG	2 cut(s)	95, 269
BspPI	GGATC	2 cut(s)	189, 253
BspTNI	GGTCTC	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	25, 257
BssMI	GATC	2 cut(s)	181, 245
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstFNI	CGCG	2 cut(s)	95, 269
BstHHI	GCGC	2 cut(s)	61, 97
BstKTI	GATC	2 cut(s)	184, 248
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	181, 245
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstUI	CGCG	2 cut(s)	95, 269
BstV1I	GCAGC	3 cut(s)	74, 107, 334
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	2 cut(s)	181, 245
BstYI	RGATCY	2 cut(s)	181, 245
BsuRI	GGCC	1 cut(s)	538
BtgZI	GCGATG	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	2 cut(s)	61, 97
CviAII	CATG	4 cut(s)	37, 56, 442, 513
CviJI	RGCY	5 cut(s)	24, 120, 256, 308, 538
CviKI_1	RGCY	5 cut(s)	24, 120, 256, 308, 538
DpnI	GATC	2 cut(s)	183, 247
DpnII	GATC	2 cut(s)	181, 245
Eco31I	GGTCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	257
FaeI	CATG	4 cut(s)	40, 59, 445, 516
FaiI	YATR	6 cut(s)	38, 57, 395, 397, 443, 514
FatI	CATG	4 cut(s)	36, 55, 441, 512
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	85, 88, 121, 348
Fsp4HI	GCNGC	4 cut(s)	85, 88, 121, 348
FspAI	RTGCGCAY	1 cut(s)	60
FspBI	CTAG	1 cut(s)	305
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	2 cut(s)	60, 96
GluI	GCNGC	4 cut(s)	85, 88, 121, 348
GsuI	CTGGAG	2 cut(s)	4, 119
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	2 cut(s)	61, 97
Hin1II	CATG	4 cut(s)	40, 59, 445, 516
Hin6I	GCGC	2 cut(s)	59, 95
HinP1I	GCGC	2 cut(s)	59, 95
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	5 cut(s)	173, 367, 387, 406, 484
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	2 cut(s)	70, 424
Hpy166II	GTNNAC	3 cut(s)	7, 142, 438
Hpy188I	TCNGA	2 cut(s)	192, 489
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	3 cut(s)	7, 142, 438
Hpy99I	CGWCG	2 cut(s)	35, 463
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	40, 59, 445, 516
HspAI	GCGC	2 cut(s)	59, 95
Kzo9I	GATC	2 cut(s)	181, 245
Lsp1109I	GCAGC	3 cut(s)	74, 107, 334
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	2 cut(s)	219, 398
MalI	GATC	2 cut(s)	183, 247
MboI	GATC	2 cut(s)	181, 245
MboII	GAAGA	3 cut(s)	58, 124, 427
MflI	RGATCY	2 cut(s)	181, 245
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	1 cut(s)	315
MseI	TTAA	2 cut(s)	252, 314
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	95, 269
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	2 cut(s)	181, 245
NlaIII	CATG	4 cut(s)	40, 59, 445, 516
NmeAIII	GCCGAG	2 cut(s)	6, 509
NmuCI	GTSAC	1 cut(s)	398
NsbI	TGCGCA	1 cut(s)	60
PfeI	GAWTC	5 cut(s)	173, 367, 387, 406, 484
PkrI	GCNGC	4 cut(s)	86, 89, 122, 349
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	181, 245
RseI	CAYNNNNRTG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	252, 314
SatI	GCNGC	4 cut(s)	85, 88, 121, 348
Sau3AI	GATC	2 cut(s)	181, 245
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	530
SfaNI	GCATC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	82, 85, 275
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	3 cut(s)	12, 171, 437
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	1 cut(s)	315
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	5 cut(s)	173, 367, 387, 406, 484
Tru1I	TTAA	2 cut(s)	252, 314
Tru9I	TTAA	2 cut(s)	252, 314
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	87, 120, 347
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.