Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022780.1

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 433

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022780.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 272 bp

atgaggcagggaagctccaaagaagacactggtgtttcttcaacttcagagtcatcctccaaagaaggaggatatggaggaggaggaggatcccgtcggtctcgcctgaagcagcaatttcaccatcggagaagagatttggattgctgggaaaagagaacaaaggtcgcggctcggagacttgaatctgcggcggctatcttactcggagatttggattgcttggaagagacttgcagcggcggtggaggaggacgaagagacttaaaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.8

Weight (kDa)

9.5

Isoelectric Point (pI)

91.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AciI	CCGC	5 cut(s)	170, 191, 194, 240, 243
AclWI	GGATC	2 cut(s)	84, 97
AcuI	CTGAAG	2 cut(s)	30, 128
AgsI	TTSAA	2 cut(s)	42, 185
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw26I	GTCTC	4 cut(s)	105, 172, 224, 255
AlwI	GGATC	2 cut(s)	84, 97
ApeKI	GCWGC	2 cut(s)	112, 237
AsuHPI	GGTGA	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	124, 249
BccI	CCATC	1 cut(s)	132
BcoDI	GTCTC	4 cut(s)	105, 172, 224, 255
BisI	GCNGC	6 cut(s)	113, 171, 192, 195, 238, 241
BlsI	GCNGC	6 cut(s)	114, 172, 193, 196, 239, 242
BmiI	GGNNCC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BsaI	GGTCTC	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	4 cut(s)	93, 96, 99, 264
BseXI	GCAGC	2 cut(s)	124, 249
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	170
BsmAI	GTCTC	4 cut(s)	105, 172, 224, 255
Bso31I	GGTCTC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	5 cut(s)	170, 191, 194, 240, 243
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	84, 97
BspTNI	GGTCTC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	89
Bst6I	CTCTTC	3 cut(s)	127, 222, 253
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	4 cut(s)	105, 172, 224, 255
BstMBI	GATC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	124, 249
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	27
CviJI	RGCY	3 cut(s)	15, 173, 197
CviKI_1	RGCY	3 cut(s)	15, 173, 197
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	3 cut(s)	127, 222, 253
EarI	CTCTTC	3 cut(s)	127, 222, 253
Eco31I	GGTCTC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	30, 128
FaiI	YATR	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	113, 171, 192, 195, 238, 241
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	6 cut(s)	113, 171, 192, 195, 238, 241
GluI	GCNGC	6 cut(s)	113, 171, 192, 195, 238, 241
GsaI	CCCAGC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	50, 185
HphI	GGTGA	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	49, 129, 177, 209
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	15, 119, 133
Lsp1109I	GCAGC	2 cut(s)	124, 249
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	5 cut(s)	30, 35, 144, 239, 270
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	62, 67, 71, 74, 77, 80, 242, 245
MseI	TTAA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	170
NdeII	GATC	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	114, 172, 193, 196, 239, 242
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	6 cut(s)	113, 171, 192, 195, 238, 241
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	59
SetI	ASST	2 cut(s)	17, 168
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	5 cut(s)	170, 191, 194, 240, 243
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	116
TauI	GCSGC	4 cut(s)	173, 194, 197, 243
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	112, 237
TspRI	CASTG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.