Rh1BG037900

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002137
Physical Location & Seq
Forward (+)
5078993 .. 5082933
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG037900.1

Sequence Viewer

Length: 1440 bp
ATGAGTGTTCTCTTTGTTGATCAAAAAATGGCGCAAGAGGACGGGTCACCTGTAACTTCATCAGCCATGTACTTTCCCGGTTTAGGATCTCCATACCCTTGGCTTTCCCCTGGTATAGGGTCTCCATACCCTTGGCTGAGGGAGCTAAAATCTGAAGAGCGAGGTTTATGTCTGATCCAACTTCTTCAAGGCTGTGCTCATCATGTCGCTTCTGGTAGTATTGAGCAGGCAAATGTTTGGCTCGAGCAGATTTCTCAGCTCGCCTCTGCTGGTGGCGATACAATGCAGCGAATAGCGGCTTATTTCACTGAGGCACTTGCAGACCGAATGCTGAAAGGTTTGCCTGGTCTATATAAGGCCCTTAACTCAACGAAACTATCATCAATCGCAGAAGAAATTCACATTAAAAGGCTTTTCTTTGATCTCTGTCCCTTCTTAAAGCTTTCATATGTGATAACAAATCAGGCCATAGTGGAAGCTATGGAAGGGGAGAAGATGGTTCATATTATTGATCTTCATTCATTTGAGCCTGCCCAGTGGATAAATCTGATTCAGACATTAAATGCAAGACCTGAAGGTCCACCACATTTGAGAATTACAGGCATTCATGAACATAAGGAGGTGTTGGAGCAAATGGCCGCCAGGTTGACAGAAGAAGCTGAAAAACATGACATTCCCTTTCAGTTCAATGCTATAGTGAGCAAGTTAGAGAATCTTGATGTCGAAAGTTTACGTGTCAAGACTGGAGAAGCTCTTGCAGTCTGCTCTGTACTGCAGCTGCATTCACTCTTAGCAACCGATGATGACATGACCAGAAGGAAATCTCCATTAGCAACAAATAACCTGCAAAAAGTCATGCATATCAATAAACTCACTTTAGGTGAGTGGCTGGAGAAAGATCCGATCAGTGCATATAGCCTGAGTCCGGATTCTTCATTGTCCCCGCTATCTTTAGGTGCTTCCCCAAAGATGGGGAGTTTTTTAACTGCTCTTTGGGGCCTTTCCCCGAAATTAATGGTGATAACTGAGCAGGAATCAAACCACAATGGTCATACACTGATGGACAGGATCATAGAAGCACTGCACTACTATGCAGCACTTTTTGATTGCTTGGAATCTACAGTATCGAGAGCATCAATGGAGCGGCAAAAGGTTGAGAAGATGCTTTTTGGGGAGGAAATCAAAAACATCATATCATGTGAAGGAACTGACAGAAAGGAGAGGCATGAGAAGCTTGAGAAGTGGATTTTAAGGCTAGAGTTGTCTGGCTTTGGGAGGGTGCAGTTGAGCTACCATGGAAGGATGCAGGCGAAGAAGATGTTGCGTGACTATGGCTACGATGGCTATGAGATTAAAGAAGACAATGGATGTTTGGTTATTTGCTGGCATGACAGACCACTTTTTTCGGTGTCAGCCTGGAGATTCCGGAGATACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

479

Amino Acids

54.18

Weight (kDa)

5.97

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 58 - 474 2e-122 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 1144
AccIII TCCGGA 2 cut(s) 925, 1425
AciI CCGC 4 cut(s) 296, 639, 944, 1144
AclWI GGATC 4 cut(s) 94, 169, 893, 1076
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 2 cut(s) 174, 594
AfaI GTAC 2 cut(s) 71, 771
AfiI CCNNNNNNNGG 5 cut(s) 83, 116, 925, 970, 971
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 2 cut(s) 188, 688
AjnI CCWGG 4 cut(s) 109, 343, 641, 1415
AluBI AGCT 9 cut(s) 145, 259, 442, 479, 659, 752, 778, 1234, 1290
AluI AGCT 9 cut(s) 145, 259, 442, 479, 659, 752, 778, 1234, 1290
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 4 cut(s) 94, 169, 893, 1076
Ama87I CYCGRG 1 cut(s) 242
Aor13HI TCCGGA 2 cut(s) 925, 1425
AoxI GGCC 4 cut(s) 357, 465, 636, 997
ApeKI GCWGC 4 cut(s) 286, 775, 778, 1094
ApoI RAATTY 1 cut(s) 396
AseI ATTAAT 1 cut(s) 1013
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 3 cut(s) 358, 578, 997
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 3 cut(s) 39, 893, 1030
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 1365
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 298, 765, 787, 1106
BccI CCATC 4 cut(s) 490, 964, 1054, 1334
BciT130I CCWGG 4 cut(s) 111, 345, 643, 1417
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 1256
BfmI CTRYAG 3 cut(s) 693, 773, 1119
BfuAI ACCTGC 1 cut(s) 852
BisI GCNGC 7 cut(s) 287, 297, 639, 776, 779, 1095, 1145
BlsI GCNGC 7 cut(s) 288, 298, 640, 777, 780, 1096, 1146
Bme1390I CCNGG 5 cut(s) 78, 111, 345, 643, 1417
Bme18I GGWCC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 358, 578, 997
BmiI GGNNCC 1 cut(s) 998
BmrFI CCNGG 5 cut(s) 78, 111, 345, 643, 1417
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 3 cut(s) 1142, 1152, 1293
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 1365
BpmI CTGGAG 3 cut(s) 765, 911, 1438
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 1256
BpuMI CCSGG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 734
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 98, 109, 131, 1294
BsaWI WCCGGW 2 cut(s) 925, 1425
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 116, 925, 970, 971
Bse1I ACTGG 2 cut(s) 535, 748
BseAI TCCGGA 2 cut(s) 925, 1425
BseBI CCWGG 4 cut(s) 111, 345, 643, 1417
BseDI CCNNGG 4 cut(s) 98, 109, 131, 1294
BseGI GGATG 2 cut(s) 1308, 1373
BseLI CCNNNNNNNGG 5 cut(s) 83, 116, 925, 970, 971
BseMII CTCAG 5 cut(s) 128, 269, 300, 911, 1017
BseNI ACTGG 2 cut(s) 535, 748
BseXI GCAGC 4 cut(s) 298, 765, 787, 1106
BsgI GTGCAG 2 cut(s) 1067, 1301
BshFI GGCC 4 cut(s) 359, 467, 638, 999
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 78, 926, 1426
BslFI GGGAC 2 cut(s) 414, 925
BslI CCNNNNNNNGG 5 cut(s) 83, 116, 925, 970, 971
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 2 cut(s) 414, 925
BsmI GAATGC 3 cut(s) 333, 603, 781
BsnI GGCC 4 cut(s) 359, 467, 638, 999
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 2 cut(s) 925, 1425
Bsp143I GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
Bsp19I CCATGG 1 cut(s) 1294
BspACI CCGC 4 cut(s) 296, 639, 944, 1144
BspANI GGCC 4 cut(s) 359, 467, 638, 999
BspCNI CTCAG 5 cut(s) 129, 268, 301, 912, 1018
BspEI TCCGGA 2 cut(s) 925, 1425
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 998
BspMAI CTGCAG 1 cut(s) 777
BspMI ACCTGC 1 cut(s) 852
BspPI GGATC 4 cut(s) 94, 169, 893, 1076
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 1144
BsrI ACTGG 2 cut(s) 535, 748
BssECI CCNNGG 4 cut(s) 98, 109, 131, 1294
BssMI GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
BssT1I CCWWGG 3 cut(s) 98, 131, 1294
Bst2UI CCWGG 4 cut(s) 111, 345, 643, 1417
Bst4CI ACNGT 1 cut(s) 1123
Bst6I CTCTTC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 5 cut(s) 228, 261, 531, 1308, 1385
BstDEI CTNAG 6 cut(s) 137, 255, 309, 790, 920, 1026
BstDSI CCRYGG 1 cut(s) 1294
BstEII GGTNACC 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 1308, 1373
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 8 cut(s) 22, 89, 177, 424, 514, 901, 906, 1071
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 142, 1231, 1341
BstNI CCWGG 4 cut(s) 111, 345, 643, 1417
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 5 cut(s) 76, 109, 343, 641, 1415
BstSFI CTRYAG 3 cut(s) 693, 773, 1119
BstV1I GCAGC 4 cut(s) 298, 765, 787, 1106
BstV2I GAAGAC 1 cut(s) 1365
BstX2I RGATCY 2 cut(s) 86, 898
BstXI CCANNNNNNTGG 2 cut(s) 99, 132
BstYI RGATCY 2 cut(s) 86, 898
BsuRI GGCC 4 cut(s) 359, 467, 638, 999
BtgI CCRYGG 1 cut(s) 1294
BtsCI GGATG 2 cut(s) 1308, 1373
BtsI GCAGTG 1 cut(s) 1079
BtsIMutI CAGTG 5 cut(s) 306, 542, 913, 1055, 1079
BveI ACCTGC 1 cut(s) 852
Cac8I GCNNGC 5 cut(s) 228, 261, 531, 1308, 1385
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 358, 578, 997
Csp6I GTAC 2 cut(s) 70, 770
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviQI GTAC 2 cut(s) 70, 770
DdeI CTNAG 6 cut(s) 137, 255, 309, 790, 920, 1026
DpnI GATC 8 cut(s) 21, 88, 176, 423, 513, 900, 905, 1070
DpnII GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
DrdI GACNNNNNNGTC 1 cut(s) 576
DseDI GACNNNNNNGTC 1 cut(s) 576
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 3 cut(s) 98, 131, 1294
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 174, 594
Eco88I CYCGRG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO109I RGGNCCY 2 cut(s) 358, 997
EcoO65I GGTNACC 1 cut(s) 45
EcoRII CCWGG 4 cut(s) 109, 343, 641, 1415
EcoT14I CCWWGG 3 cut(s) 98, 131, 1294
EcoT22I ATGCAT 1 cut(s) 861
ErhI CCWWGG 3 cut(s) 98, 131, 1294
FaqI GGGAC 2 cut(s) 414, 925
FauI CCCGC 1 cut(s) 951
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 287, 297, 639, 776, 779, 1095, 1145
FokI GGATG 2 cut(s) 1315, 1380
Fsp4HI GCNGC 7 cut(s) 287, 297, 639, 776, 779, 1095, 1145
FspBI CTAG 1 cut(s) 1256
GlaI GCGC 1 cut(s) 33
GluI GCNGC 7 cut(s) 287, 297, 639, 776, 779, 1095, 1145
GsuI CTGGAG 3 cut(s) 765, 911, 1438
HaeIII GGCC 4 cut(s) 359, 467, 638, 999
HapII CCGG 3 cut(s) 78, 926, 1426
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 2 cut(s) 440, 1232
HinfI GANTC 7 cut(s) 550, 712, 922, 929, 1034, 1115, 1422
HpaII CCGG 3 cut(s) 78, 926, 1426
HphI GGTGA 3 cut(s) 39, 893, 1030
Hpy166II GTNNAC 3 cut(s) 581, 648, 731
Hpy188I TCNGA 5 cut(s) 154, 174, 549, 555, 903
Hpy188III TCNNGA 6 cut(s) 608, 716, 739, 926, 1128, 1426
Hpy8I GTNNAC 3 cut(s) 581, 648, 731
HpyAV CCTTC 6 cut(s) 442, 479, 569, 810, 1196, 1293
HpyCH4III ACNGT 1 cut(s) 1123
HpyCH4IV ACGT 1 cut(s) 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 1231, 1341
HpyF3I CTNAG 6 cut(s) 137, 255, 309, 790, 920, 1026
HpySE526I ACGT 1 cut(s) 733
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 2 cut(s) 925, 1425
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 3 cut(s) 142, 628, 1141
Lsp1109I GCAGC 4 cut(s) 298, 765, 787, 1106
LweI GCATC 3 cut(s) 1142, 1152, 1293
MaeI CTAG 1 cut(s) 1256
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 3 cut(s) 45, 52, 1325
MalI GATC 8 cut(s) 21, 88, 176, 423, 513, 900, 905, 1070
MbiI CCGCTC 1 cut(s) 1144
MboI GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
MflI RGATCY 2 cut(s) 86, 898
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 3 cut(s) 396, 594, 1010
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 2 cut(s) 202, 606
MnlI CCTC 9 cut(s) 31, 132, 155, 274, 304, 613, 1168, 1215, 1269
Mph1103I ATGCAT 1 cut(s) 861
MroI TCCGGA 2 cut(s) 925, 1425
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 8 cut(s) 363, 405, 437, 560, 983, 1013, 1250, 1353
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 3 cut(s) 78, 926, 1426
MspR9I CCNGG 5 cut(s) 78, 111, 345, 643, 1417
Mva1269I GAATGC 3 cut(s) 333, 603, 781
MvaI CCWGG 4 cut(s) 111, 345, 643, 1417
MwoI GCNNNNNNNGC 3 cut(s) 142, 1231, 1341
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 1294
NdeI CATATG 1 cut(s) 448
NdeII GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
NlaIV GGNNCC 1 cut(s) 998
NmuCI GTSAC 2 cut(s) 45, 1325
NsiI ATGCAT 1 cut(s) 861
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 607
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 3 cut(s) 333, 603, 781
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 6 cut(s) 550, 712, 929, 1034, 1115, 1422
PkrI GCNGC 7 cut(s) 288, 298, 640, 777, 780, 1096, 1146
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
Ppu21I YACGTR 1 cut(s) 734
PshBI ATTAAT 1 cut(s) 1013
Psp6I CCWGG 4 cut(s) 109, 343, 641, 1415
PspEI GGTNACC 1 cut(s) 45
PspGI CCWGG 4 cut(s) 109, 343, 641, 1415
PspN4I GGNNCC 1 cut(s) 998
PspPI GGNCC 3 cut(s) 358, 578, 997
PspXI VCTCGAGB 1 cut(s) 242
PstI CTGCAG 1 cut(s) 777
PsuI RGATCY 2 cut(s) 86, 898
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 2 cut(s) 71, 771
RsaNI GTAC 2 cut(s) 70, 770
RseI CAYNNNNRTG 1 cut(s) 1089
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 8 cut(s) 363, 405, 437, 560, 983, 1013, 1250, 1353
SatI GCNGC 7 cut(s) 287, 297, 639, 776, 779, 1095, 1145
Sau3AI GATC 8 cut(s) 19, 86, 174, 421, 511, 898, 903, 1068
Sau96I GGNCC 3 cut(s) 358, 578, 997
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 5 cut(s) 78, 111, 345, 643, 1417
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 3 cut(s) 1142, 1152, 1293
SfcI CTRYAG 3 cut(s) 693, 773, 1119
Sfr274I CTCGAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 2 cut(s) 242, 1235
SmoI CTYRAG 2 cut(s) 242, 1235
Sse9I AATT 3 cut(s) 396, 594, 1010
SsiI CCGC 4 cut(s) 296, 639, 944, 1144
SspMI CTAG 1 cut(s) 1256
StyD4I CCNGG 5 cut(s) 76, 109, 343, 641, 1415
StyI CCWWGG 3 cut(s) 98, 131, 1294
TaaI ACNGT 1 cut(s) 1123
TaiI ACGT 1 cut(s) 736
TaqI TCGA 3 cut(s) 243, 723, 1127
TaqII GACCGA 1 cut(s) 339
TasI AATT 3 cut(s) 396, 594, 1010
TatI WGTACW 2 cut(s) 69, 769
TauI GCSGC 3 cut(s) 299, 641, 1147
TfiI GAWTC 6 cut(s) 550, 712, 929, 1034, 1115, 1422
Tru1I TTAA 8 cut(s) 363, 405, 437, 560, 983, 1013, 1250, 1353
Tru9I TTAA 8 cut(s) 363, 405, 437, 560, 983, 1013, 1250, 1353
TscAI CASTG 5 cut(s) 313, 542, 913, 1062, 1086
TseFI GTSAC 2 cut(s) 45, 1325
TseI GCWGC 4 cut(s) 286, 775, 778, 1094
Tsp45I GTSAC 2 cut(s) 45, 1325
TspDTI ATGAA 8 cut(s) 48, 435, 491, 506, 510, 596, 624, 924
TspRI CASTG 5 cut(s) 313, 542, 913, 1062, 1086
VpaK11BI GGWCC 1 cut(s) 578
VspI ATTAAT 1 cut(s) 1013
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 1 cut(s) 396
XhoI CTCGAG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 1256
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.