AT1G52650

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003780
Physical Location & Seq
Forward (+)
19610856 .. 19612417
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52650.1

Sequence Viewer

Length: 1398 bp
ATGGATCATGTCAGCAGTCTACCAGAAGGTGTTCTTTGCAATATATTTTCTTTCCTAACCACAAAAGAAGCTGCTTTGACTTCGATTCTCTGCAAGAGATGGCGCAATCTCCTCGCGTTTGTCCCTAATCTCGTTATTGATGACTCTGTCTTTCTCCATCCCGAAGAGGGTAAGGAGGAAAGGTACGAAATTCAGCAGAGCTTCATGGAGTTTGTTGATAGAGTATTGGCATTGCAGGGTAATTCTCCCATTAAGAAATTCTCCCTCAAGTTTAGAACTGACTTTGCTTCACACCGAGTGAATGCTTGGATAAGTAACGTGTTGGCTCGTGGTGTTTCCGAACTTGATGTGCTTGTCATTTTGTATGGAGCAGAATTCCTTCCGCTGTCTCCAAAATGTTTCAAGAGCAGGAATCTTGTAACTCTGAAAATAAACAGTCTTGGTATTGATTGGTTGGCTGGGGACATATTCTTACCAATGCTTAAAACTCTCGTTCTACACTCGGTTAAGTTATGTGTTGATAAGTTTTTTTTTCGTGCTTTGCCTGCGCTCGAGGAATTAGTCTTGTTTGCTGTTAGCTGGAGAGATAGGGATGTCACTGTGTCAAATGCGAGCATCAAGACCCTAACAATAAAGTTCAACTATTATTTAGGCACTCTTTCGCTTGATACACCTAGTCTTGTTTCCTTCTGTTTCTCTGACCATGTTGCTAAAGACTACCCTCTAGCTAAAATGGAAAAATTATCTGAGGCTAGGATCAGCCTTTTGGTAACTGAATATCAGATCGAGCGAGCAAGAGCGCCAAATATCTATTGGGTTGAGGATGATGTTGTTCTCCGATTAGTTAATGTGGGGAAGCTCATGAAAGGCATACGGAATGTTCAGTATCTCAACTTGTCTCCTAATACTCTCGAGGTACTTTCTAAGTGTTGTGAATCGATGCCACTGTTCAACAACCTTAAATCGTTAACTATTGAGAGTAACGAGAGGCGAGGATGGCAAGCAATGCCAGTTCTTCTAAGGAACTGTCCACATCTAGAAACTCTAGTCCTTGAGGGTCTCTTGCACCATGTCACAGAGAAATGCAGGAATGCTTGTGACTGCGTTTCCCAAGAAGAAAAAGGTCGTTCACTCACATCTTGTCAAGTAAAAGTGTTAGAGATTAAAGGGTTTCAAGGAACAACCAAAGAGATGCACACGATAAAACATTTCTTGGAACATTTTCCGTGTTTGAGAGAGATAAAAATCCATATGGAAGAGAATGGTCCTACACAGCTCAGAGTCCCTGAAGTGTCTCAATATATCGCGGAGATGATGGAACACTACGAAAAATCATCCAGTTGCAATGTCCAGCTCCTAGTGGGTGGTTACTTGTGTAAGAAGTGGACTACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

465

Amino Acids

53.16

Weight (kDa)

7.52

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 38 4.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AccII CGCG 2 cut(s) 116, 1307
AciI CCGC 2 cut(s) 383, 1307
AclWI GGATC 2 cut(s) 12, 764
AcsI RAATTY 3 cut(s) 189, 257, 374
AcuI CTGAAG 1 cut(s) 1308
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 185, 918
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 403, 640, 952, 1175
AluBI AGCT 7 cut(s) 71, 201, 579, 728, 859, 1276, 1354
AluI AGCT 7 cut(s) 71, 201, 579, 728, 859, 1276, 1354
Alw26I GTCTC 4 cut(s) 393, 903, 1064, 1299
AlwI GGATC 2 cut(s) 12, 764
Ama87I CYCGRG 2 cut(s) 551, 911
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 3 cut(s) 189, 257, 374
Asp700I GAANNNNTTC 3 cut(s) 30, 378, 1221
AspLEI GCGC 3 cut(s) 105, 550, 802
AspS9I GGNCC 1 cut(s) 1265
AvaI CYCGRG 2 cut(s) 551, 911
AvaII GGWCC 1 cut(s) 1265
BauI CACGAG 1 cut(s) 327
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 93, 165, 990, 1309
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BcoDI GTCTC 4 cut(s) 393, 903, 1064, 1299
BfaI CTAG 6 cut(s) 675, 725, 753, 1037, 1046, 1358
BfoI RGCGCY 1 cut(s) 803
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 1265
BmeT110I CYCGRG 2 cut(s) 551, 911
BmgT120I GGNCC 1 cut(s) 1265
BmsI GCATC 3 cut(s) 624, 930, 1182
BpmI CTGGAG 1 cut(s) 601
BpuEI CTTGAG 2 cut(s) 251, 1073
Bsa29I ATCGAT 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 1244
BsaI GGTCTC 1 cut(s) 1064
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 1010, 1338
Bse3DI GCAATG 3 cut(s) 230, 1011, 1351
Bse8I GATNNNNATC 1 cut(s) 1244
BseCI ATCGAT 1 cut(s) 938
BseGI GGATG 5 cut(s) 157, 598, 829, 1001, 1334
BseJI GATNNNNATC 1 cut(s) 1244
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 3 cut(s) 230, 1011, 1351
BseMII CTCAG 2 cut(s) 738, 1291
BseNI ACTGG 2 cut(s) 1010, 1338
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 2 cut(s) 116, 1307
BshVI ATCGAT 1 cut(s) 938
BsiHKCI CYCGRG 2 cut(s) 551, 911
BslFI GGGAC 3 cut(s) 107, 476, 1268
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 4 cut(s) 393, 903, 1064, 1299
BsmFI GGGAC 3 cut(s) 107, 476, 1268
BsmI GAATGC 2 cut(s) 307, 1096
Bso31I GGTCTC 1 cut(s) 1064
BsoBI CYCGRG 2 cut(s) 551, 911
Bsp143I GATC 3 cut(s) 4, 756, 783
BspACI CCGC 2 cut(s) 383, 1307
BspCNI CTCAG 2 cut(s) 739, 1290
BspDI ATCGAT 1 cut(s) 938
BspFNI CGCG 2 cut(s) 116, 1307
BspHI TCATGA 1 cut(s) 861
BspPI GGATC 2 cut(s) 12, 764
BspTNI GGTCTC 1 cut(s) 1064
BsrDI GCAATG 3 cut(s) 230, 1011, 1351
BsrI ACTGG 2 cut(s) 1010, 1338
BssMI GATC 3 cut(s) 4, 756, 783
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst4CI ACNGT 4 cut(s) 437, 601, 948, 1028
Bst6I CTCTTC 2 cut(s) 159, 1251
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstC8I GCNNGC 4 cut(s) 546, 613, 792, 1002
BstDEI CTNAG 4 cut(s) 747, 924, 1019, 1277
BstF5I GGATG 5 cut(s) 157, 598, 829, 1001, 1334
BstFNI CGCG 2 cut(s) 116, 1307
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 3 cut(s) 105, 550, 802
BstKTI GATC 3 cut(s) 7, 759, 786
BstMAI GTCTC 4 cut(s) 393, 903, 1064, 1299
BstMBI GATC 3 cut(s) 4, 756, 783
BstMWI GCNNNNNNNGC 3 cut(s) 545, 997, 1006
BstUI CGCG 2 cut(s) 116, 1307
BstV1I GCAGC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 938
BsuTUI ATCGAT 1 cut(s) 938
BtsCI GGATG 5 cut(s) 157, 598, 829, 1001, 1334
BtsIMutI CAGTG 2 cut(s) 597, 944
Cac8I GCNNGC 4 cut(s) 546, 613, 792, 1002
CciI TCATGA 1 cut(s) 861
CfoI GCGC 3 cut(s) 105, 550, 802
Cfr13I GGNCC 1 cut(s) 1265
ClaI ATCGAT 1 cut(s) 938
Csp6I GTAC 2 cut(s) 184, 917
CviAII CATG 5 cut(s) 8, 205, 704, 862, 1070
CviQI GTAC 2 cut(s) 184, 917
DdeI CTNAG 4 cut(s) 747, 924, 1019, 1277
DpnI GATC 3 cut(s) 6, 758, 785
DpnII GATC 3 cut(s) 4, 756, 783
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 159, 1251
EarI CTCTTC 2 cut(s) 159, 1251
Eco31I GGTCTC 1 cut(s) 1064
Eco47I GGWCC 1 cut(s) 1265
Eco57I CTGAAG 1 cut(s) 1308
Eco88I CYCGRG 2 cut(s) 551, 911
EcoRI GAATTC 1 cut(s) 374
FaeI CATG 5 cut(s) 11, 208, 707, 865, 1073
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 3 cut(s) 107, 476, 1268
FatI CATG 5 cut(s) 7, 204, 703, 861, 1069
FauNDI CATATG 1 cut(s) 1251
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 5 cut(s) 144, 605, 836, 1008, 1321
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 6 cut(s) 675, 725, 753, 1037, 1046, 1358
GlaI GCGC 3 cut(s) 104, 549, 801
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 601
HaeII RGCGCY 1 cut(s) 803
HhaI GCGC 3 cut(s) 105, 550, 802
Hin1II CATG 5 cut(s) 11, 208, 707, 865, 1073
Hin6I GCGC 3 cut(s) 103, 548, 800
HinP1I GCGC 3 cut(s) 103, 548, 800
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HinfI GANTC 5 cut(s) 85, 143, 412, 935, 1281
HpaI GTTAAC 1 cut(s) 969
Hpy166II GTNNAC 5 cut(s) 20, 969, 1031, 1130, 1386
Hpy188I TCNGA 7 cut(s) 340, 426, 700, 748, 783, 839, 1280
Hpy188III TCNNGA 6 cut(s) 161, 403, 619, 862, 911, 1037
Hpy8I GTNNAC 5 cut(s) 20, 969, 1031, 1130, 1386
HpyAV CCTTC 3 cut(s) 20, 389, 697
HpyCH4III ACNGT 4 cut(s) 437, 601, 948, 1028
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 7 cut(s) 39, 93, 235, 1066, 1086, 1195, 1344
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 997, 1006
HpyF3I CTNAG 4 cut(s) 747, 924, 1019, 1277
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 5 cut(s) 11, 208, 707, 865, 1073
HspAI GCGC 3 cut(s) 103, 548, 800
KspAI GTTAAC 1 cut(s) 969
Kzo9I GATC 3 cut(s) 4, 756, 783
LmnI GCTCC 2 cut(s) 368, 1359
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 624, 930, 1182
MaeI CTAG 6 cut(s) 675, 725, 753, 1037, 1046, 1358
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 8 cut(s) 314, 418, 595, 769, 980, 1072, 1097, 1367
MalI GATC 3 cut(s) 6, 758, 785
MboI GATC 3 cut(s) 4, 756, 783
MboII GAAGA 4 cut(s) 176, 1007, 1127, 1268
MluCI AATT 6 cut(s) 189, 241, 257, 374, 557, 740
MlyI GAGTC 2 cut(s) 137, 1290
MroXI GAANNNNTTC 3 cut(s) 30, 378, 1221
MseI TTAA 7 cut(s) 252, 483, 507, 846, 960, 968, 1164
MspA1I CMGCKG 1 cut(s) 385
Mva1269I GAATGC 2 cut(s) 307, 1096
MvnI CGCG 2 cut(s) 116, 1307
MwoI GCNNNNNNNGC 3 cut(s) 545, 997, 1006
NdeI CATATG 1 cut(s) 1251
NdeII GATC 3 cut(s) 4, 756, 783
NlaIII CATG 5 cut(s) 11, 208, 707, 865, 1073
NmuCI GTSAC 3 cut(s) 595, 1072, 1097
PaeR7I CTCGAG 2 cut(s) 551, 911
PagI TCATGA 1 cut(s) 861
PctI GAATGC 2 cut(s) 307, 1096
PdmI GAANNNNTTC 3 cut(s) 30, 378, 1221
PfeI GAWTC 3 cut(s) 85, 412, 935
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 137, 1289
PpsI GAGTC 2 cut(s) 137, 1289
PspFI CCCAGC 1 cut(s) 458
PspPI GGNCC 1 cut(s) 1265
PspXI VCTCGAGB 1 cut(s) 551
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 2 cut(s) 185, 918
RsaNI GTAC 2 cut(s) 184, 917
SaqAI TTAA 7 cut(s) 252, 483, 507, 846, 960, 968, 1164
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 4, 756, 783
Sau96I GGNCC 1 cut(s) 1265
SchI GAGTC 2 cut(s) 137, 1290
SfaNI GCATC 3 cut(s) 624, 930, 1182
Sfr274I CTCGAG 2 cut(s) 551, 911
SinI GGWCC 1 cut(s) 1265
SlaI CTCGAG 2 cut(s) 551, 911
SmlI CTYRAG 4 cut(s) 266, 551, 911, 1052
SmoI CTYRAG 4 cut(s) 266, 551, 911, 1052
Sse9I AATT 6 cut(s) 189, 241, 257, 374, 557, 740
SsiI CCGC 2 cut(s) 383, 1307
SspMI CTAG 6 cut(s) 675, 725, 753, 1037, 1046, 1358
TaaI ACNGT 4 cut(s) 437, 601, 948, 1028
TaiI ACGT 1 cut(s) 321
TaqI TCGA 5 cut(s) 83, 552, 786, 912, 938
TasI AATT 6 cut(s) 189, 241, 257, 374, 557, 740
TfiI GAWTC 3 cut(s) 85, 412, 935
Tru1I TTAA 7 cut(s) 252, 483, 507, 846, 960, 968, 1164
Tru9I TTAA 7 cut(s) 252, 483, 507, 846, 960, 968, 1164
TscAI CASTG 2 cut(s) 604, 951
TseFI GTSAC 3 cut(s) 595, 1072, 1097
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 3 cut(s) 595, 1072, 1097
TspDTI ATGAA 2 cut(s) 193, 878
TspGWI ACGGA 2 cut(s) 889, 1215
TspRI CASTG 2 cut(s) 604, 951
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 1265
XapI RAATTY 3 cut(s) 189, 257, 374
XbaI TCTAGA 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XhoI CTCGAG 2 cut(s) 551, 911
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 3 cut(s) 30, 378, 1221
XspI CTAG 6 cut(s) 675, 725, 753, 1037, 1046, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.