AT3G58890

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Forward (+)
21771046 .. 21772577
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58890.1

Sequence Viewer

Length: 882 bp
ATGCAAACCCTCTTCCTAGTTCCAGCACAACAATTGGTCTTGCAACTTGCAAGTGGAGGCACTTTCTTACCAATGCTTAAAACTCTCATTATCAAGGCTAAGTGGATTGGTTCTGAATGGGATGAAACCGTGTCAAGTGCAAGCCTCAGGAAGCTAGTTATCTATTGCCAAGGTGGTTGTGCAGACTTGCTGAATTCAAAGAGTATTTCTTTCGATACTCCAAGTCTTCTTTACCTTGTGTATTCTGTTTTTGTTGCGGAGGACTATCCAAAAGTCAACTTGACAAATTTGGTTGAAGCTAAATTCAACCTTATGTTACTTGACGAACAAATCGAGCAAATAAGAGAGCCGAATGATGAGGATGATGTTTTTCTCCGTCTTGGAAATGTGTTGAAGCTCTTTGCTGGCATAAGAAATGTTCAGAAACTTTACTTATCTGCAAATATTCTTGAGGTCCTTTCTCTATGCTGTGAATCATTTCCGGTGTTCAACAACCTCAAAATTTTACGAATAAGGAGTGCCGAGGATCGAGGATGGCAAGCAATGCCGGTTCTCTTAAGGAACTGTCCACATTTAGAAACTCTAGTCCTTGAGGGTCTTATACACTATGTGACAGGTGAATGTGGGAATGCTTGTGACTGCAAATCTCGGGAGGGAATAGTTAGTTCGCTCTTATCATGTCCAGTGAAGAAGGTGCAGATTAAAGGGTTTAAAGGAACGATGAGAGAGTCGTCAATGATATGGCATTTCATGACGTCTTTCCCGTGTTTAAAGTTCTTGGTGTACACTCCCATGGATAAGAAGTGGATTTTCGGAGTGGCTTTTTCGAATGTAAGAGTTTTCATAATCGACATTGTCATGATTATTATCTTCCTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

293

Amino Acids

33.14

Weight (kDa)

7.47

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 758
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 534
AcsI RAATTY 4 cut(s) 193, 286, 302, 501
AcyI GRCGYC 1 cut(s) 755
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 1 cut(s) 785
AflII CTTAAG 1 cut(s) 556
AgsI TTSAA 5 cut(s) 198, 296, 307, 394, 490
AluBI AGCT 3 cut(s) 154, 299, 397
AluI AGCT 3 cut(s) 154, 299, 397
AlwI GGATC 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 648
ApoI RAATTY 4 cut(s) 193, 286, 302, 501
Asp700I GAANNNNTTC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 629
AsuII TTCGAA 1 cut(s) 827
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 1 cut(s) 454
AxyI CCTNAGG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 1 cut(s) 528
BfaI CTAG 3 cut(s) 17, 155, 584
BfrI CTTAAG 1 cut(s) 556
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 1 cut(s) 454
BpiI GAAGAC 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 827
BpuEI CTTGAG 2 cut(s) 470, 611
BsaBI GATNNNNATC 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 755
BsaJI CCNNGG 3 cut(s) 169, 522, 792
BsaWI WCCGGW 1 cut(s) 481
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 683
Bse21I CCTNAGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 866
BseDI CCNNGG 3 cut(s) 169, 522, 792
BseGI GGATG 3 cut(s) 127, 367, 539
BseJI GATNNNNATC 1 cut(s) 866
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 683
BsgI GTGCAG 2 cut(s) 201, 716
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 2 cut(s) 482, 548
BsmI GAATGC 1 cut(s) 634
BsoBI CYCGRG 1 cut(s) 648
Bsp119I TTCGAA 1 cut(s) 827
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 1 cut(s) 526
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 159
BspHI TCATGA 2 cut(s) 750, 858
BspPI GGATC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 827
BspTI CTTAAG 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 547
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 1 cut(s) 683
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 169, 522, 792
BssMI GATC 1 cut(s) 526
BssNI GRCGYC 1 cut(s) 755
BssT1I CCWWGG 2 cut(s) 169, 792
Bst4CI ACNGT 2 cut(s) 130, 566
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 755
BstAFI CTTAAG 1 cut(s) 556
BstAPI GCANNNNNTGC 1 cut(s) 544
BstAUI TGTACA 1 cut(s) 783
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 142, 406, 540
BstDEI CTNAG 3 cut(s) 99, 146, 875
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 3 cut(s) 127, 367, 539
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 792
BtsCI GGATG 3 cut(s) 127, 367, 539
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 142, 406, 540
CciI TCATGA 2 cut(s) 750, 858
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 784
CviAII CATG 4 cut(s) 678, 751, 793, 859
CviJI RGCY 7 cut(s) 98, 144, 154, 299, 349, 397, 821
CviKI_1 RGCY 7 cut(s) 98, 144, 154, 299, 349, 397, 821
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 3 cut(s) 99, 146, 875
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
DraI TTTAAA 2 cut(s) 712, 771
DraIII CACNNNGTG 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 169, 792
Eco47I GGWCC 1 cut(s) 454
Eco81I CCTNAGG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 169, 792
ErhI CCWWGG 2 cut(s) 169, 792
FaeI CATG 4 cut(s) 681, 754, 796, 862
FatI CATG 4 cut(s) 677, 750, 792, 858
FokI GGATG 3 cut(s) 134, 374, 546
FspBI CTAG 3 cut(s) 17, 155, 584
HapII CCGG 2 cut(s) 482, 548
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 4 cut(s) 681, 754, 796, 862
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 2 cut(s) 473, 728
HpaII CCGG 2 cut(s) 482, 548
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 4 cut(s) 277, 569, 784, 786
Hpy188I TCNGA 3 cut(s) 115, 423, 815
Hpy188III TCNNGA 5 cut(s) 148, 449, 650, 751, 859
Hpy8I GTNNAC 4 cut(s) 277, 569, 784, 786
HpyAV CCTTC 1 cut(s) 685
HpyCH4III ACNGT 2 cut(s) 130, 566
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 8 cut(s) 4, 43, 50, 140, 182, 440, 642, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 544
HpyF3I CTNAG 3 cut(s) 99, 146, 875
HpySE526I ACGT 1 cut(s) 755
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 4 cut(s) 681, 754, 796, 862
Kzo9I GATC 1 cut(s) 526
LpnPI CCDG 7 cut(s) 36, 133, 390, 495, 561, 600, 696
MaeI CTAG 3 cut(s) 17, 155, 584
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 3 cut(s) 315, 610, 635
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 4 cut(s) 4, 218, 700, 862
MfeI CAATTG 1 cut(s) 32
MluCI AATT 5 cut(s) 32, 193, 286, 302, 501
MlyI GAGTC 1 cut(s) 737
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 6 cut(s) 78, 557, 702, 711, 770, 880
MslI CAYNNNNRTG 2 cut(s) 791, 857
MspCI CTTAAG 1 cut(s) 556
MspI CCGG 2 cut(s) 482, 548
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 544
NcoI CCATGG 1 cut(s) 792
NdeII GATC 1 cut(s) 526
NlaIII CATG 4 cut(s) 681, 754, 796, 862
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 610, 635
NspV TTCGAA 1 cut(s) 827
PagI TCATGA 2 cut(s) 750, 858
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 761
PctI GAATGC 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 473
PflFI GACNNNGTC 1 cut(s) 854
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PpuMI RGGWCCY 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 454
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 854
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
RseI CAYNNNNRTG 2 cut(s) 791, 857
SaqAI TTAA 6 cut(s) 78, 557, 702, 711, 770, 880
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 737
SfuI TTCGAA 1 cut(s) 827
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 2 cut(s) 791, 857
SmlI CTYRAG 3 cut(s) 449, 556, 590
SmoI CTYRAG 3 cut(s) 449, 556, 590
Sse9I AATT 5 cut(s) 32, 193, 286, 302, 501
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 445
SspMI CTAG 3 cut(s) 17, 155, 584
StyI CCWWGG 2 cut(s) 169, 792
TaaI ACNGT 2 cut(s) 130, 566
TaiI ACGT 1 cut(s) 758
TaqI TCGA 5 cut(s) 213, 333, 529, 827, 849
TasI AATT 5 cut(s) 32, 193, 286, 302, 501
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 6 cut(s) 78, 557, 702, 711, 770, 880
Tru9I TTAA 6 cut(s) 78, 557, 702, 711, 770, 880
TscAI CASTG 1 cut(s) 690
TseFI GTSAC 2 cut(s) 610, 635
Tsp45I GTSAC 2 cut(s) 610, 635
TspDTI ATGAA 3 cut(s) 138, 739, 832
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 690
Tth111I GACNNNGTC 1 cut(s) 854
Vha464I CTTAAG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 4 cut(s) 193, 286, 302, 501
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 3 cut(s) 17, 155, 584
ZraI GACGTC 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.