AT4G13960

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003780
Physical Location & Seq
Reverse (-)
8060565 .. 8063052
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13960.2

Sequence Viewer

Length: 1395 bp
ATGGATCATGTAAGCAGTCTGCCAGACGAGGTTCTTTATCATATATTGTCCTTCCTTACCACAAAGGAAGCTGCTTTGACTTCGATTCTCAGCAAAAGATGGCGCAATCTGTTTACGTTTGTACCTAATCTTGATATTGATGACTCTGTCTTTCTCCATCCCCAAGAGGGTAAGGAGGATAGGTACGAAATTCAAAAGAGCTTCATGAAATTTGTTGATAGAGTATTGGCTTTGCAGGGTAATTCTCCCATTAAGAAACTCTCCCTCAAGTTGAGAACTGGCTTTGATTCACACCGAGTGGATGGTTGGATAAGTAATGCCTTGGCTCGTGGTGTTACCGAACTTGATCTGCTAATCATTTTGTATACAGCAGATTACTATCTGCTGTCTTCAAAATATTTCAGGAACCTGGTTACGCTGAAGCTAAACAGTGTTCGTGTTGATTGGTTAGCTGCTGGTGACATATTCTTACCAATGCTTAAAACCCTAGTTCTTCACTCAGTTAGGTTATGTGTTGATAAGTATTTTTTTAGTGCTTTACCTGCGCTTGAGGAATTAGTCTTGGTTAGTGTTAACTGGGGAGGTAAGGATGTCAACGTATCAAATGCAAGCCTCAAAATCCTAACAGTAAATTACAACATTTGTTTAGGCACTTTTTCGGTTGATACACCTAGTCTTGTTTACTTCTGTTTCACTGAGTATGTTGCTATAGACTACCCTGTAGTTATAATGCAAAACTTATTTGAGGCTAGAATCAGCCTTTTGGTAACTCAAGATCAAATCGAGCGAGCAAGAGCGCCAAATATCGATTGGGTGGAGGATGATGTTGTTCTCCGACTAGTTAATATGGAGAAGCTCATAAAAGGCATACGTAATGTTCAGTATATGTACTTGTCTCCGAATACTCTCGAGGTTCTTTCTCTGTGTTGTGAATCGATGCCAGTGTTCAACAATCTCAAATCGTTAACTCTTAAGAGTCACAAGAGTCGAGGATGGCAAGCAATGCCAGTTCTTCTAAGGAACTGTCCACATCTAGAAACTCTAGTCCTTGAGGGTATCTTGCACCATGTCACAGATAAATGTGGGTATGCTTGTGACTGTGTTTCCCGAGAAGAAAAAGGTTGTTCACTCACATCTTGTCCAGTAAAAGTGTTAGAGATTAAAGGGTTTCGAGGAACGATAAAAGAGATGCACATGATAAAGCATTTCGTGAACTATTTTCCTTGTTTGATGGAAACAAATATTTATATTGAAGAGAGTGGTCCTCCAAAGCTCAGAGTCCCCCAAGTGTGTGAATTTATCGCGGAGATGATGGAACACTACGGAAAATCATCCAGTTTCAATGTCCAGCTCCTAGTGGGTGGTTACTTGTATAAGAAGTGGACTGCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

464

Amino Acids

53.04

Weight (kDa)

6.86

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 39 6.9e-08 F-box domain
F-box-like PF12937 5 - 37 8.6e-06 F-box-like
LRR_At5g56370 PF24758 100 - 232 2.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
Acc36I ACCTGC 1 cut(s) 550
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 1304
AciI CCGC 1 cut(s) 1304
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 189, 209, 1295
AcuI CTGAAG 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 3 cut(s) 123, 185, 890
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 971
AgsI TTSAA 5 cut(s) 194, 393, 949, 1253, 1342
AhlI ACTAGT 1 cut(s) 838
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 7 cut(s) 71, 201, 424, 452, 856, 1273, 1351
AluI AGCT 7 cut(s) 71, 201, 424, 452, 856, 1273, 1351
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 908, 1107
ApeKI GCWGC 2 cut(s) 71, 452
ApoI RAATTY 3 cut(s) 189, 209, 1295
AspLEI GCGC 3 cut(s) 105, 547, 799
AspS9I GGNCC 1 cut(s) 1262
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 2 cut(s) 908, 1107
AvaII GGWCC 1 cut(s) 1262
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 58, 439
BccI CCATC 6 cut(s) 93, 165, 296, 987, 1225, 1306
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 900
BcuI ACTAGT 1 cut(s) 838
BfaI CTAG 7 cut(s) 488, 672, 750, 839, 1034, 1043, 1355
BfmI CTRYAG 2 cut(s) 708, 720
BfoI RGCGCY 1 cut(s) 800
BfrI CTTAAG 1 cut(s) 971
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 2 cut(s) 72, 453
BlsI GCNGC 2 cut(s) 73, 454
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 1262
BmeT110I CYCGRG 2 cut(s) 908, 1107
BmgT120I GGNCC 1 cut(s) 1262
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 2 cut(s) 927, 1179
BmuI ACTGGG 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 1249, 1281
BpuEI CTTGAG 4 cut(s) 251, 569, 756, 1070
Bsa29I ATCGAT 2 cut(s) 807, 935
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 6 cut(s) 283, 581, 941, 1007, 1142, 1335
Bse3DI GCAATG 1 cut(s) 1008
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 410
BseCI ATCGAT 2 cut(s) 807, 935
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 6 cut(s) 157, 307, 595, 826, 998, 1331
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 4 cut(s) 103, 513, 687, 1288
BseNI ACTGG 6 cut(s) 283, 581, 941, 1007, 1142, 1335
BseXI GCAGC 2 cut(s) 58, 439
BsgI GTGCAG 1 cut(s) 1371
Bsh1236I CGCG 1 cut(s) 1304
BshVI ATCGAT 2 cut(s) 807, 935
BsiHKCI CYCGRG 2 cut(s) 908, 1107
BslFI GGGAC 1 cut(s) 1265
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 1265
BsoBI CYCGRG 2 cut(s) 908, 1107
Bsp143I GATC 3 cut(s) 4, 346, 775
BspACI CCGC 1 cut(s) 1304
BspCNI CTCAG 4 cut(s) 102, 512, 688, 1287
BspDI ATCGAT 2 cut(s) 807, 935
BspFNI CGCG 1 cut(s) 1304
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 971
BsrDI GCAATG 1 cut(s) 1008
BsrI ACTGG 6 cut(s) 283, 581, 941, 1007, 1142, 1335
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 4, 346, 775
BssNAI GTATAC 1 cut(s) 366
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 431, 628, 1025, 1100
Bst6I CTCTTC 1 cut(s) 1248
BstAFI CTTAAG 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 3 cut(s) 610, 789, 999
BstDEI CTNAG 5 cut(s) 89, 499, 696, 1016, 1274
BstF5I GGATG 6 cut(s) 157, 307, 595, 826, 998, 1331
BstFNI CGCG 1 cut(s) 1304
BstH2I RGCGCY 1 cut(s) 800
BstHHI GCGC 3 cut(s) 105, 547, 799
BstKTI GATC 3 cut(s) 7, 349, 778
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 3 cut(s) 4, 346, 775
BstMWI GCNNNNNNNGC 2 cut(s) 542, 1003
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 2 cut(s) 708, 720
BstSNI TACGTA 1 cut(s) 872
BstUI CGCG 1 cut(s) 1304
BstV1I GCAGC 2 cut(s) 58, 439
BstV2I GAAGAC 1 cut(s) 381
BstZ17I GTATAC 1 cut(s) 366
Bsu15I ATCGAT 2 cut(s) 807, 935
BsuTUI ATCGAT 2 cut(s) 807, 935
BtsCI GGATG 6 cut(s) 157, 307, 595, 826, 998, 1331
BtsIMutI CAGTG 3 cut(s) 436, 693, 948
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 610, 789, 999
CciI TCATGA 1 cut(s) 204
CfoI GCGC 3 cut(s) 105, 547, 799
Cfr13I GGNCC 1 cut(s) 1262
ClaI ATCGAT 2 cut(s) 807, 935
CsiI ACCWGGT 1 cut(s) 408
Csp6I GTAC 3 cut(s) 122, 184, 889
CviAII CATG 4 cut(s) 8, 205, 1067, 1195
CviQI GTAC 3 cut(s) 122, 184, 889
DdeI CTNAG 5 cut(s) 89, 499, 696, 1016, 1274
DpnI GATC 3 cut(s) 6, 348, 777
DpnII GATC 3 cut(s) 4, 346, 775
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 1248
EarI CTCTTC 1 cut(s) 1248
Eco105I TACGTA 1 cut(s) 872
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 1262
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 2 cut(s) 908, 1107
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 4 cut(s) 11, 208, 1070, 1198
FaqI GGGAC 1 cut(s) 1265
FatI CATG 4 cut(s) 7, 204, 1066, 1194
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 2 cut(s) 72, 453
FokI GGATG 6 cut(s) 144, 314, 602, 833, 1005, 1318
Fsp4HI GCNGC 2 cut(s) 72, 453
FspBI CTAG 7 cut(s) 488, 672, 750, 839, 1034, 1043, 1355
GlaI GCGC 3 cut(s) 104, 546, 798
GluI GCNGC 2 cut(s) 72, 453
HaeII RGCGCY 1 cut(s) 800
HhaI GCGC 3 cut(s) 105, 547, 799
Hin1II CATG 4 cut(s) 11, 208, 1070, 1198
Hin6I GCGC 3 cut(s) 103, 545, 797
HinP1I GCGC 3 cut(s) 103, 545, 797
HincII GTYRAC 3 cut(s) 574, 595, 966
HindII GTYRAC 3 cut(s) 574, 595, 966
HinfI GANTC 8 cut(s) 85, 143, 287, 753, 932, 976, 985, 1278
HpaI GTTAAC 2 cut(s) 574, 966
HphI GGTGA 1 cut(s) 470
Hpy188I TCNGA 3 cut(s) 836, 900, 1277
Hpy188III TCNNGA 8 cut(s) 131, 205, 403, 773, 908, 1034, 1107, 1210
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 4 cut(s) 431, 628, 1025, 1100
HpyCH4IV ACGT 3 cut(s) 116, 597, 871
HpyCH4V TGCA 6 cut(s) 235, 608, 733, 1063, 1192, 1388
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 1003
HpyF3I CTNAG 5 cut(s) 89, 499, 696, 1016, 1274
HpySE526I ACGT 3 cut(s) 116, 597, 871
Hsp92II CATG 4 cut(s) 11, 208, 1070, 1198
HspAI GCGC 3 cut(s) 103, 545, 797
KspAI GTTAAC 2 cut(s) 574, 966
Kzo9I GATC 3 cut(s) 4, 346, 775
LmnI GCTCC 1 cut(s) 1356
Lsp1109I GCAGC 2 cut(s) 58, 439
LweI GCATC 2 cut(s) 927, 1179
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 7 cut(s) 488, 672, 750, 839, 1034, 1043, 1355
MaeII ACGT 3 cut(s) 116, 597, 871
MaeIII GTNAC 8 cut(s) 334, 412, 458, 766, 977, 1069, 1094, 1364
MalI GATC 3 cut(s) 6, 348, 777
MboI GATC 3 cut(s) 4, 346, 775
MboII GAAGA 5 cut(s) 381, 485, 1004, 1124, 1265
MluCI AATT 6 cut(s) 189, 209, 241, 554, 631, 1295
MlyI GAGTC 4 cut(s) 137, 985, 994, 1287
MmeI TCCRAC 2 cut(s) 287, 859
MseI TTAA 7 cut(s) 252, 480, 573, 843, 965, 972, 1161
MspCI CTTAAG 1 cut(s) 971
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 1304
MwoI GCNNNNNNNGC 2 cut(s) 542, 1003
NdeII GATC 3 cut(s) 4, 346, 775
NlaIII CATG 4 cut(s) 11, 208, 1070, 1198
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 4 cut(s) 458, 977, 1069, 1094
PaeR7I CTCGAG 1 cut(s) 908
PagI TCATGA 1 cut(s) 204
PfeI GAWTC 4 cut(s) 85, 287, 753, 932
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 73, 454
PleI GAGTC 4 cut(s) 137, 984, 993, 1286
PpsI GAGTC 4 cut(s) 137, 984, 993, 1286
Ppu21I YACGTR 1 cut(s) 872
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 1262
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 3 cut(s) 123, 185, 890
RsaNI GTAC 3 cut(s) 122, 184, 889
SaqAI TTAA 7 cut(s) 252, 480, 573, 843, 965, 972, 1161
SatI GCNGC 2 cut(s) 72, 453
Sau3AI GATC 3 cut(s) 4, 346, 775
Sau96I GGNCC 1 cut(s) 1262
SchI GAGTC 4 cut(s) 137, 985, 994, 1287
ScrFI CCNGG 1 cut(s) 410
SexAI ACCWGGT 1 cut(s) 408
SfaNI GCATC 2 cut(s) 927, 1179
SfcI CTRYAG 2 cut(s) 708, 720
Sfr274I CTCGAG 1 cut(s) 908
SinI GGWCC 1 cut(s) 1262
SlaI CTCGAG 1 cut(s) 908
SmlI CTYRAG 6 cut(s) 266, 548, 771, 908, 971, 1049
SmoI CTYRAG 6 cut(s) 266, 548, 771, 908, 971, 1049
SnaBI TACGTA 1 cut(s) 872
SpeI ACTAGT 1 cut(s) 838
Sse9I AATT 6 cut(s) 189, 209, 241, 554, 631, 1295
SsiI CCGC 1 cut(s) 1304
SspI AATATT 2 cut(s) 398, 1243
SspMI CTAG 7 cut(s) 488, 672, 750, 839, 1034, 1043, 1355
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 431, 628, 1025, 1100
TaiI ACGT 3 cut(s) 119, 600, 874
TaqI TCGA 7 cut(s) 83, 783, 807, 909, 935, 988, 1171
TasI AATT 6 cut(s) 189, 209, 241, 554, 631, 1295
TatI WGTACW 1 cut(s) 888
TfiI GAWTC 4 cut(s) 85, 287, 753, 932
Tru1I TTAA 7 cut(s) 252, 480, 573, 843, 965, 972, 1161
Tru9I TTAA 7 cut(s) 252, 480, 573, 843, 965, 972, 1161
TscAI CASTG 3 cut(s) 436, 700, 948
TseFI GTSAC 4 cut(s) 458, 977, 1069, 1094
TseI GCWGC 2 cut(s) 71, 452
Tsp45I GTSAC 4 cut(s) 458, 977, 1069, 1094
TspDTI ATGAA 2 cut(s) 193, 221
TspGWI ACGGA 1 cut(s) 1338
TspRI CASTG 3 cut(s) 436, 700, 948
Tth111I GACNNNGTC 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 971
VpaK11BI GGWCC 1 cut(s) 1262
XapI RAATTY 3 cut(s) 189, 209, 1295
XbaI TCTAGA 1 cut(s) 1033
XcmI CCANNNNNNNNNTGG 1 cut(s) 807
XhoI CTCGAG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 7 cut(s) 488, 672, 750, 839, 1034, 1043, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.