AT5G38390

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003780
Physical Location & Seq
Forward (+)
15366011 .. 15368053
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38390.1

Sequence Viewer

Length: 1371 bp
ATGGATCTATTAAGCAATCTACCATACGAGCTTCTTTGCCATATATTGTCCTTCCTTACAACAAAAGAGGCTGCTTTGACATCGGTTCTGTCAAAGAGGTGGCGCAATCTAATTGCATTTGTCCCTAATGTTGATATTGTGGACCATGATATTCGAGAGCTTTTCATGGATTTTGTTGATAGAGTATTGGCATTGCAGGGTAACTCTCCCATTAACAAATTTTCCCTCGATTGTTCCGGTGTTGATTCGGATAGAGTGGATTGTTGGATACAGAATGTGATGGTGCGTGGTGTTTCCGAGCTTAATTTATCAATCTTTGTGGATTCGGTTTTCGAAGATGACTATAATCTCTTTCCAAAAGTGTTTGAGAACAAAAAACTAGTTAAGCTCGGATTAAGTTATATTTCTTGGTTGGATGGGAGCATTTTCTTACCAATGCTTAAAACACTCGTTCTTGAATCAGTTTTGTTATCTGTTGAGAAGTTTGAGATTCTTCTTCATGCTTTGCCTGCGCTTGAGGAATTAGTCATGAATAATATATACTGGAAAGAGCGGGATGTTGTCGATTTGATTGTTTCAAGTGAAAGCCTCAAGACCCTAACAATAAACTTCATCGTTTGTACACATACTTTGTCATTTGATACACCTATTCTTGCTTACCTATCTTACTCTGGTTATGTCGTGGACGATTATGCCGAAGCTAAAATGGAAAACTTGTTTGAGGCTCGAATCAGCCTTCTTGTAGTTGAAGGCGATATCAGCCGAGTAAGAGCGCTAATAAACAATGATTTGTTAGAGGATGATGAGTACGATGTTCTCCAATTTGAAAATGTGTGGAAGCTAATGAATGGTATTCGAAATATTCGGTGTCTCTATTTGTCTCCTAATACTCTTGAGGTGCTTTCTCTATGCTGTGAATCGATGCCAGTGTTCAAAAACCTCAAATCTTTGTCTATCAAGAGTGCCGAGAATCGAGGATGGCAAGCAATGCCAGTTCTTCTAAGGAACTGTCCGCATTTAGAAACTCTAGTCCTTGAGGGTCTATTGCACCATGTAACAGATAAATGTGGGGATGCTTGTGACTGTGTTTCCCGAGAAGACAAAGGTCGTTCACTCACATCGTGTCCAGTAAAAGTGTTGGAGATTAAAGGGTTCCAAGGAACAACCAAAGAGATGAACATGATAAAACATTTCTTGGAATATTTTCCGTGTTTGAAAGAGCTAAAAATGTATATGGAAGAGAATGATCCTGCACAGCTCAGAGTCCCTGAAGTTATCACGGGGGAGATGATGGAACGCTACAAAAAGTCATCAAGTTGCAATGTCCAGCTCCTAGTAGGTGGTAAGTTGTATAAGAAGTGGACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

456

Amino Acids

52.18

Weight (kDa)

5.04

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 39 1.9e-09 F-box domain
F-box-like PF12937 4 - 38 5e-06 F-box-like
LRR_At5g56370 PF24758 86 - 223 4e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 553
AciI CCGC 2 cut(s) 553, 1013
AclWI GGATC 2 cut(s) 12, 1241
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 1290
AdeI CACNNNGTG 1 cut(s) 1122
AfaI GTAC 2 cut(s) 622, 809
AfeI AGCGCT 1 cut(s) 774
AgsI TTSAA 6 cut(s) 458, 579, 749, 827, 934, 1216
AhlI ACTAGT 1 cut(s) 379
AluBI AGCT 9 cut(s) 31, 160, 301, 388, 701, 841, 1222, 1258, 1330
AluI AGCT 9 cut(s) 31, 160, 301, 388, 701, 841, 1222, 1258, 1330
Alw26I GTCTC 2 cut(s) 875, 885
AlwI GGATC 2 cut(s) 12, 1241
Ama87I CYCGRG 1 cut(s) 1092
Aor51HI AGCGCT 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 3 cut(s) 105, 514, 775
AspS9I GGNCC 1 cut(s) 142
AsuII TTCGAA 2 cut(s) 333, 856
AvaI CYCGRG 1 cut(s) 1092
AvaII GGWCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 1104
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 274, 410, 972, 1285
BciVI GTATCC 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 875, 885
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 3 cut(s) 380, 1028, 1334
BfoI RGCGCY 1 cut(s) 776
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 1092
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 1154
BmsI GCATC 2 cut(s) 912, 1063
BoxI GACNNNNGTC 1 cut(s) 1104
BpiI GAAGAC 1 cut(s) 1104
Bpu14I TTCGAA 2 cut(s) 333, 856
BpuEI CTTGAG 4 cut(s) 536, 575, 914, 1055
Bsa29I ATCGAT 1 cut(s) 920
BsaJI CCNNGG 1 cut(s) 1156
BsaWI WCCGGW 1 cut(s) 236
Bse1I ACTGG 4 cut(s) 548, 926, 992, 1127
Bse3DI GCAATG 3 cut(s) 191, 993, 1327
BseCI ATCGAT 1 cut(s) 920
BseDI CCNNGG 1 cut(s) 1156
BseGI GGATG 5 cut(s) 421, 562, 805, 983, 1078
BseMI GCAATG 3 cut(s) 191, 993, 1327
BseMII CTCAG 1 cut(s) 1273
BseNI ACTGG 4 cut(s) 548, 926, 992, 1127
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1236
BshVI ATCGAT 1 cut(s) 920
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 107, 1250
BsmAI GTCTC 2 cut(s) 875, 885
BsmFI GGGAC 2 cut(s) 107, 1250
BsoBI CYCGRG 1 cut(s) 1092
Bsp119I TTCGAA 2 cut(s) 333, 856
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 2 cut(s) 4, 1246
BspACI CCGC 2 cut(s) 553, 1013
BspCNI CTCAG 1 cut(s) 1272
BspDI ATCGAT 1 cut(s) 920
BspHI TCATGA 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 1154
BspPI GGATC 2 cut(s) 12, 1241
BspT104I TTCGAA 2 cut(s) 333, 856
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 3 cut(s) 191, 993, 1327
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 4 cut(s) 548, 926, 992, 1127
BssECI CCNNGG 1 cut(s) 1156
BssMI GATC 2 cut(s) 4, 1246
BssT1I CCWWGG 1 cut(s) 1156
Bst4CI ACNGT 2 cut(s) 1010, 1085
Bst6I CTCTTC 1 cut(s) 1233
BstAPI GCANNNNNTGC 1 cut(s) 988
BstAUI TGTACA 1 cut(s) 620
BstBI TTCGAA 2 cut(s) 333, 856
BstC8I GCNNGC 2 cut(s) 510, 984
BstDEI CTNAG 2 cut(s) 1001, 1259
BstF5I GGATG 5 cut(s) 421, 562, 805, 983, 1078
BstH2I RGCGCY 1 cut(s) 776
BstHHI GCGC 3 cut(s) 105, 514, 775
BstKTI GATC 2 cut(s) 7, 1249
BstMAI GTCTC 2 cut(s) 875, 885
BstMBI GATC 2 cut(s) 4, 1246
BstMWI GCNNNNNNNGC 3 cut(s) 509, 759, 988
BstPAI GACNNNNGTC 1 cut(s) 1104
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 1104
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 920
BsuI GTATCC 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 920
BtsCI GGATG 5 cut(s) 421, 562, 805, 983, 1078
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 2 cut(s) 510, 984
CciI TCATGA 1 cut(s) 528
CfoI GCGC 3 cut(s) 105, 514, 775
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 920
Csp6I GTAC 2 cut(s) 621, 808
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 7 cut(s) 146, 166, 500, 529, 1052, 1180, 1368
CviQI GTAC 2 cut(s) 621, 808
DdeI CTNAG 2 cut(s) 1001, 1259
DpnI GATC 2 cut(s) 6, 1248
DpnII GATC 2 cut(s) 4, 1246
DraIII CACNNNGTG 1 cut(s) 1122
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
Eco130I CCWWGG 1 cut(s) 1156
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 142
Eco47III AGCGCT 1 cut(s) 774
Eco57I CTGAAG 1 cut(s) 1290
Eco88I CYCGRG 1 cut(s) 1092
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 1156
FaeI CATG 7 cut(s) 149, 169, 503, 532, 1055, 1183, 1371
FaqI GGGAC 2 cut(s) 107, 1250
FatI CATG 7 cut(s) 145, 165, 499, 528, 1051, 1179, 1367
FauI CCCGC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 5 cut(s) 428, 569, 812, 990, 1085
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 380, 1028, 1334
GlaI GCGC 3 cut(s) 104, 513, 774
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 776
HapII CCGG 1 cut(s) 237
HhaI GCGC 3 cut(s) 105, 514, 775
Hin1II CATG 7 cut(s) 149, 169, 503, 532, 1055, 1183, 1371
Hin6I GCGC 3 cut(s) 103, 512, 773
HinP1I GCGC 3 cut(s) 103, 512, 773
HinfI GANTC 9 cut(s) 245, 323, 458, 490, 729, 917, 970, 1263, 1363
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 5 cut(s) 142, 623, 685, 1112, 1362
Hpy188I TCNGA 4 cut(s) 250, 298, 392, 1262
Hpy188III TCNNGA 7 cut(s) 155, 455, 529, 592, 893, 958, 1092
Hpy8I GTNNAC 5 cut(s) 142, 623, 685, 1112, 1362
HpyAV CCTTC 3 cut(s) 61, 743, 746
HpyCH4III ACNGT 2 cut(s) 1010, 1085
HpyCH4V TGCA 5 cut(s) 116, 196, 1048, 1253, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 759, 988
HpyF3I CTNAG 2 cut(s) 1001, 1259
Hsp92II CATG 7 cut(s) 149, 169, 503, 532, 1055, 1183, 1371
HspAI GCGC 3 cut(s) 103, 512, 773
Kzo9I GATC 2 cut(s) 4, 1246
LmnI GCTCC 2 cut(s) 420, 1335
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 912, 1063
MaeI CTAG 3 cut(s) 380, 1028, 1334
MaeIII GTNAC 3 cut(s) 200, 1054, 1079
MalI GATC 2 cut(s) 6, 1248
MbiI CCGCTC 1 cut(s) 553
MboI GATC 2 cut(s) 4, 1246
MboII GAAGA 6 cut(s) 347, 485, 488, 989, 1109, 1250
MflI RGATCY 1 cut(s) 4
MluCI AATT 5 cut(s) 111, 218, 304, 521, 821
MlyI GAGTC 2 cut(s) 1272, 1357
MmeI TCCRAC 3 cut(s) 245, 393, 1119
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 7 cut(s) 11, 213, 303, 384, 395, 441, 1146
MspI CCGG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 509, 759, 988
NdeII GATC 2 cut(s) 4, 1246
NlaIII CATG 7 cut(s) 149, 169, 503, 532, 1055, 1183, 1371
NlaIV GGNNCC 1 cut(s) 1154
NmeAIII GCCGAG 2 cut(s) 788, 991
NmuCI GTSAC 1 cut(s) 1079
NspV TTCGAA 2 cut(s) 333, 856
PagI TCATGA 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 7 cut(s) 245, 323, 458, 490, 729, 917, 970
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 1271, 1357
PpsI GAGTC 2 cut(s) 1271, 1357
PshAI GACNNNNGTC 1 cut(s) 1104
PspN4I GGNNCC 1 cut(s) 1154
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 622, 809
RsaNI GTAC 2 cut(s) 621, 808
SaqAI TTAA 7 cut(s) 11, 213, 303, 384, 395, 441, 1146
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 2 cut(s) 4, 1246
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 1272, 1357
SfaNI GCATC 2 cut(s) 912, 1063
SfuI TTCGAA 2 cut(s) 333, 856
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 4 cut(s) 515, 590, 893, 1034
SmoI CTYRAG 4 cut(s) 515, 590, 893, 1034
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 5 cut(s) 111, 218, 304, 521, 821
SsiI CCGC 2 cut(s) 553, 1013
SspI AATATT 2 cut(s) 862, 1202
SspMI CTAG 3 cut(s) 380, 1028, 1334
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 2 cut(s) 1010, 1085
TaqI TCGA 8 cut(s) 154, 228, 333, 564, 727, 856, 920, 973
TasI AATT 5 cut(s) 111, 218, 304, 521, 821
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 7 cut(s) 245, 323, 458, 490, 729, 917, 970
Tru1I TTAA 7 cut(s) 11, 213, 303, 384, 395, 441, 1146
Tru9I TTAA 7 cut(s) 11, 213, 303, 384, 395, 441, 1146
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 1079
TspDTI ATGAA 6 cut(s) 154, 488, 545, 601, 860, 1190
TspGWI ACGGA 1 cut(s) 1197
TspRI CASTG 1 cut(s) 933
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 3 cut(s) 380, 1028, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.