AT3G58930

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Reverse (-)
21778164 .. 21780663
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58930.3

Sequence Viewer

Length: 1449 bp
ATGGATCGTGTCAGCAATCTACCAGACGGGGTTCGTGGTCATATCTTGTCCTTCCTTCCCGCCAAGCACATTGCTTTGACTTCGGTTCTCTCAAAGAGCTGGCTCAATCTCTGGAAACTTATCCCTATTCTCGACATTGATGACTCTGAATTTCTTCACCCGGAAGAGGGTAAAGCGGAAAGGCTTGAAATTCGACAGAGCTTCGTTGATTTCGTGGACAGAGTTTTGGCTTTGCAGGATGATTCTCCCATTGATAGATTCTCTCTCAAGTGTATAACTGGTATTCATCCAGATCATGTGAATCGTTGGATATGTAATGTGCTGCAGCGTGGTGTTTCCGATCTTGATCTTTTCATTGATTTTTCCTATGAGGATACCCAAGAGGATGAGGATATGCTACCTCAAGAGATGTTCGTCAGTAAGACATTGGTCAAGCTGAAAATAAGAAATGATCGTTGTGTGGATTGGTGGTGTGGAAAGGGAGGCACTTCCTTACCAATGCTTAAAAGTCTTTATATTGACTCGGACTTGATTCTTTGGGGTAAGATGAAAAGGTTTCTTTCTTCTTTCCCTGTGCTTGAGGAATTACGAATGGCTAGTATGGAGTGGAAGGAATCACACGAAACCGTGTCAAGTGCAAGCCTCAGGAAGCTAAGTATCCTTGGCACCGGTTGTGAAGACTATGTGAATCCAAAGAGCATTTCTTTTGATACTCCAAGTCTTCTTTACTTAAACTACTCTGATTTAGTTGCCGAGGATTATCCATTAGTTAATATGGGAAAGTTACTTGAGGCTCGAATCAACCTTATAGTAAAAGATGATCAGATCAAGCGGGTAAGAGAGCCAAATAATGACTTGTTACAGGATGATGCGGGTAATGTTGTTCTCCAATTTGGCAATGTGGTGAAGCTCATGAACGGCATCCAAAATATTCAGATACTTTACTTAACTGCTGATACTCTTGAGGTACTTTCTCTATGCTGTGAATCAATGCCGGTGTTCAACAACCTCAAAACCTTAGGTATTAAGAGTGAAGAGGGTCGCGGTTGGCAAGCAGTGCCAGCTCTTCTGAGAAACTGTCCGCATCTAGAATATCTAATCATTGAGGGTCTCTTACACAATGTGACAGATAAATGCGGGGATGCTTGTGACTGCATTTCTCGGGAAGACAAAGGTCGATCGCTTGCTTCTTGTCCCGTGAAGAAGGTAGAGATTCAAGGGTTTAGAGGAACGATGAGAGAGATAAACATGATAGGGCACTTCTTGAGGTCTTTTAAGTGTTTAAAGGAGATGGGGATATTTCCTGAAGAAGAGGGTCCTACAAACTTTGAAAATCCTGGAGCGTTTGAGTATGTTGAGAAGATATTGAAGCTCTACAATGAGATATCGAATTGTGATGTTTACTTCCTGGTGTGGGGTTACATGCGTAGGAAATGGACTACACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

482

Amino Acids

55.19

Weight (kDa)

5.17

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 41 4.7e-06 F-box domain
LRR_At5g56370 PF24758 100 - 227 1.2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 665
AccII CGCG 1 cut(s) 1044
AciI CCGC 7 cut(s) 60, 176, 832, 872, 1044, 1082, 1137
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 149, 189
AcuI CTGAAG 1 cut(s) 1326
AdeI CACNNNGTG 1 cut(s) 1123
AfaI GTAC 1 cut(s) 969
AfiI CCNNNNNNNGG 3 cut(s) 166, 167, 1414
AgeI ACCGGT 1 cut(s) 668
AgsI TTSAA 5 cut(s) 188, 1003, 1217, 1331, 1369
AjnI CCWGG 2 cut(s) 1336, 1407
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AluBI AGCT 7 cut(s) 99, 201, 436, 652, 910, 1064, 1372
AluI AGCT 7 cut(s) 99, 201, 436, 652, 910, 1064, 1372
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 1161
ApeKI GCWGC 2 cut(s) 322, 325
ApoI RAATTY 2 cut(s) 149, 189
AsiGI ACCGGT 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 149, 916
AvaI CYCGRG 1 cut(s) 1161
AvaII GGWCC 1 cut(s) 1316
AxyI CCTNAGG 2 cut(s) 644, 1018
BaeGI GKGCMC 1 cut(s) 1260
BanI GGYRCC 1 cut(s) 665
BbsI GAAGAC 3 cut(s) 684, 713, 1173
BbvI GCAGC 2 cut(s) 309, 337
BccI CCATC 1 cut(s) 1285
BceAI ACGGC 1 cut(s) 934
BciT130I CCWGG 2 cut(s) 1338, 1409
BciVI GTATCC 2 cut(s) 367, 668
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 2 cut(s) 597, 1088
BfmI CTRYAG 1 cut(s) 323
BfuI GTATCC 2 cut(s) 367, 668
BisI GCNGC 2 cut(s) 323, 326
BlsI GCNGC 2 cut(s) 324, 327
Bme1390I CCNGG 3 cut(s) 161, 1338, 1409
Bme18I GGWCC 1 cut(s) 1316
BmeT110I CYCGRG 1 cut(s) 1161
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 2 cut(s) 667, 1317
BmrFI CCNGG 3 cut(s) 161, 1338, 1409
BmsI GCATC 4 cut(s) 859, 930, 1093, 1132
BoxI GACNNNNGTC 2 cut(s) 428, 1173
BpiI GAAGAC 3 cut(s) 684, 713, 1173
BpmI CTGGAG 1 cut(s) 1359
BpuEI CTTGAG 6 cut(s) 251, 387, 599, 809, 983, 1285
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 1115
BsaJI CCNNGG 2 cut(s) 661, 753
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 167, 1414
Bse118I RCCGGY 2 cut(s) 668, 994
Bse1I ACTGG 1 cut(s) 283
Bse21I CCTNAGG 2 cut(s) 644, 1018
Bse3DI GCAATG 2 cut(s) 69, 904
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 1338, 1409
BseDI CCNNGG 2 cut(s) 661, 753
BseGI GGATG 6 cut(s) 244, 286, 391, 871, 921, 1147
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 166, 167, 1414
BseMI GCAATG 2 cut(s) 69, 904
BseMII CTCAG 2 cut(s) 658, 1061
BseNI ACTGG 1 cut(s) 283
BseSI GKGCMC 1 cut(s) 1260
BseXI GCAGC 2 cut(s) 309, 337
Bsh1236I CGCG 1 cut(s) 1044
Bsh1285I CGRYCG 1 cut(s) 1181
BshNI GGYRCC 1 cut(s) 665
BshTI ACCGGT 1 cut(s) 668
BsiEI CGRYCG 1 cut(s) 1181
BsiHKCI CYCGRG 1 cut(s) 1161
BsiSI CCGG 3 cut(s) 161, 669, 995
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 3 cut(s) 166, 167, 1414
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 1179
Bso31I GGTCTC 1 cut(s) 1115
BsoBI CYCGRG 1 cut(s) 1161
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp143I GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
BspACI CCGC 7 cut(s) 60, 176, 832, 872, 1044, 1082, 1137
BspCNI CTCAG 2 cut(s) 657, 1062
BspFNI CGCG 1 cut(s) 1044
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 667, 1317
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 1071
BspT107I GGYRCC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 1115
BsrDI GCAATG 2 cut(s) 69, 904
BsrFI RCCGGY 2 cut(s) 668, 994
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 2 cut(s) 668, 994
BssECI CCNNGG 2 cut(s) 661, 753
BssMI GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
BssT1I CCWWGG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 1338, 1409
Bst4CI ACNGT 2 cut(s) 628, 1079
Bst6I CTCTTC 4 cut(s) 159, 1029, 1071, 1305
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstC8I GCNNGC 5 cut(s) 101, 640, 1053, 1062, 1185
BstDEI CTNAG 4 cut(s) 644, 653, 1018, 1070
BstF5I GGATG 6 cut(s) 244, 286, 391, 871, 921, 1147
BstFNI CGCG 1 cut(s) 1044
BstKTI GATC 8 cut(s) 7, 295, 343, 349, 454, 823, 828, 1181
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
BstMCI CGRYCG 1 cut(s) 1181
BstMWI GCNNNNNNNGC 2 cut(s) 1057, 1061
BstNI CCWGG 2 cut(s) 1338, 1409
BstNSI RCATGY 1 cut(s) 1426
BstPAI GACNNNNGTC 2 cut(s) 428, 1173
BstSCI CCNGG 3 cut(s) 159, 1336, 1407
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 1260
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 2 cut(s) 309, 337
BstV2I GAAGAC 3 cut(s) 684, 713, 1173
Bsu36I CCTNAGG 2 cut(s) 644, 1018
BsuI GTATCC 2 cut(s) 367, 668
BtsCI GGATG 6 cut(s) 244, 286, 391, 871, 921, 1147
BtsI GCAGTG 1 cut(s) 1062
BtsIMutI CAGTG 1 cut(s) 1062
Cac8I GCNNGC 5 cut(s) 101, 640, 1053, 1062, 1185
CciI TCATGA 1 cut(s) 912
Cfr10I RCCGGY 2 cut(s) 668, 994
Cfr13I GGNCC 1 cut(s) 1316
Csp6I GTAC 1 cut(s) 968
CspAI ACCGGT 1 cut(s) 668
CviAII CATG 4 cut(s) 296, 913, 1249, 1423
CviQI GTAC 1 cut(s) 968
DdeI CTNAG 4 cut(s) 644, 653, 1018, 1070
DpnI GATC 8 cut(s) 6, 294, 342, 348, 453, 822, 827, 1180
DpnII GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
DraI TTTAAA 1 cut(s) 1284
DraIII CACNNNGTG 1 cut(s) 1123
Eam1104I CTCTTC 4 cut(s) 159, 1029, 1071, 1305
EarI CTCTTC 4 cut(s) 159, 1029, 1071, 1305
Eco130I CCWWGG 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 1115
Eco32I GATATC 1 cut(s) 1386
Eco47I GGWCC 1 cut(s) 1316
Eco57I CTGAAG 1 cut(s) 1326
Eco81I CCTNAGG 2 cut(s) 644, 1018
Eco88I CYCGRG 1 cut(s) 1161
EcoO109I RGGNCCY 1 cut(s) 1316
EcoRII CCWGG 2 cut(s) 1336, 1407
EcoRV GATATC 1 cut(s) 1386
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 4 cut(s) 299, 916, 1252, 1426
FaqI GGGAC 1 cut(s) 1179
FatI CATG 4 cut(s) 295, 912, 1248, 1422
FauI CCCGC 4 cut(s) 67, 825, 865, 1130
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 2 cut(s) 323, 326
FokI GGATG 6 cut(s) 251, 273, 398, 878, 908, 1154
Fsp4HI GCNGC 2 cut(s) 323, 326
FspBI CTAG 2 cut(s) 597, 1088
GluI GCNGC 2 cut(s) 323, 326
GsuI CTGGAG 1 cut(s) 1359
HapII CCGG 3 cut(s) 161, 669, 995
Hin1II CATG 4 cut(s) 299, 916, 1252, 1426
HpaII CCGG 3 cut(s) 161, 669, 995
HphI GGTGA 2 cut(s) 149, 916
Hpy166II GTNNAC 2 cut(s) 217, 1402
Hpy188I TCNGA 7 cut(s) 148, 340, 526, 742, 825, 936, 1071
Hpy8I GTNNAC 2 cut(s) 217, 1402
HpyAV CCTTC 4 cut(s) 61, 65, 604, 1198
HpyCH4III ACNGT 2 cut(s) 628, 1079
HpyCH4V TGCA 4 cut(s) 235, 325, 638, 1155
HpyF10VI GCNNNNNNNGC 2 cut(s) 1057, 1061
HpyF3I CTNAG 4 cut(s) 644, 653, 1018, 1070
Hsp92II CATG 4 cut(s) 299, 916, 1252, 1426
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 1 cut(s) 1340
Lsp1109I GCAGC 2 cut(s) 309, 337
LweI GCATC 4 cut(s) 859, 930, 1093, 1132
MaeI CTAG 2 cut(s) 597, 1088
MaeIII GTNAC 5 cut(s) 783, 858, 1123, 1148, 1418
MalI GATC 8 cut(s) 6, 294, 342, 348, 453, 822, 827, 1180
MboI GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
MhlI GDGCHC 1 cut(s) 1260
MluCI AATT 5 cut(s) 149, 189, 584, 890, 1390
MlyI GAGTC 2 cut(s) 137, 515
MmeI TCCRAC 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 7 cut(s) 504, 731, 771, 947, 1026, 1275, 1283
MspI CCGG 3 cut(s) 161, 669, 995
MspR9I CCNGG 3 cut(s) 161, 1338, 1409
MvaI CCWGG 2 cut(s) 1338, 1409
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 2 cut(s) 1057, 1061
NciI CCSGG 1 cut(s) 161
NdeII GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
NlaIII CATG 4 cut(s) 299, 916, 1252, 1426
NlaIV GGNNCC 2 cut(s) 667, 1317
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 2 cut(s) 1123, 1148
NspI RCATGY 1 cut(s) 1426
PagI TCATGA 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 9 cut(s) 242, 258, 301, 532, 614, 688, 798, 986, 1213
PfoI TCCNGGA 1 cut(s) 1336
PinAI ACCGGT 1 cut(s) 668
PkrI GCNGC 2 cut(s) 324, 327
Ple19I CGATCG 1 cut(s) 1181
PleI GAGTC 2 cut(s) 137, 515
PpsI GAGTC 2 cut(s) 137, 515
PpuMI RGGWCCY 1 cut(s) 1316
PshAI GACNNNNGTC 2 cut(s) 428, 1173
Psp5II RGGWCCY 1 cut(s) 1316
Psp6I CCWGG 2 cut(s) 1336, 1407
PspGI CCWGG 2 cut(s) 1336, 1407
PspN4I GGNNCC 2 cut(s) 667, 1317
PspPI GGNCC 1 cut(s) 1316
PspPPI RGGWCCY 1 cut(s) 1316
PstI CTGCAG 1 cut(s) 327
PvuI CGATCG 1 cut(s) 1181
RsaI GTAC 1 cut(s) 969
RsaNI GTAC 1 cut(s) 968
SapI GCTCTTC 1 cut(s) 1071
SaqAI TTAA 7 cut(s) 504, 731, 771, 947, 1026, 1275, 1283
SatI GCNGC 2 cut(s) 323, 326
Sau3AI GATC 8 cut(s) 4, 292, 340, 346, 451, 820, 825, 1178
Sau96I GGNCC 1 cut(s) 1316
SchI GAGTC 2 cut(s) 137, 515
ScrFI CCNGG 3 cut(s) 161, 1338, 1409
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 4 cut(s) 859, 930, 1093, 1132
SfcI CTRYAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 1316
SmlI CTYRAG 6 cut(s) 266, 402, 578, 788, 962, 1264
SmoI CTYRAG 6 cut(s) 266, 402, 578, 788, 962, 1264
Sse9I AATT 5 cut(s) 149, 189, 584, 890, 1390
SsiI CCGC 7 cut(s) 60, 176, 832, 872, 1044, 1082, 1137
SspI AATATT 1 cut(s) 931
SspMI CTAG 2 cut(s) 597, 1088
StyD4I CCNGG 3 cut(s) 159, 1336, 1407
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 2 cut(s) 628, 1079
TaqI TCGA 5 cut(s) 132, 193, 796, 1177, 1388
TasI AATT 5 cut(s) 149, 189, 584, 890, 1390
TfiI GAWTC 9 cut(s) 242, 258, 301, 532, 614, 688, 798, 986, 1213
Tru1I TTAA 7 cut(s) 504, 731, 771, 947, 1026, 1275, 1283
Tru9I TTAA 7 cut(s) 504, 731, 771, 947, 1026, 1275, 1283
TscAI CASTG 1 cut(s) 1062
TseFI GTSAC 2 cut(s) 1123, 1148
TseI GCWGC 2 cut(s) 322, 325
Tsp45I GTSAC 2 cut(s) 1123, 1148
TspDTI ATGAA 4 cut(s) 275, 343, 563, 929
TspRI CASTG 1 cut(s) 1062
VpaK11BI GGWCC 1 cut(s) 1316
XapI RAATTY 2 cut(s) 149, 189
XbaI TCTAGA 1 cut(s) 1087
XceI RCATGY 1 cut(s) 1426
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 597, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.