AT3G58950

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Reverse (-)
21783989 .. 21785840
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58950.1

Sequence Viewer

Length: 1254 bp
ATGGATCTCTTCAGCAGTCTACCAGATGAGGTTCTCTGTCATATATTATCCTTCCTTACCACAAAAGAGGCTGCTTTGGCATCTGTTGTCTCCAAGAGGTGGCGAAATCAGTTTGCACTTGTCCCTAATCTTGACATTGATGAAGAGGGGAAGAGGGAAAGAGAAGAAATTCTGCTGAGCTTCATGGATTTTGTGGATAATGTATTGGCATTGCAGGCTGATTCTCCCATTAAGAAGTTTTCCCTCAAGTGTAAAACTGGTGTTCATCCACGTCGACTTGATGCGTGGGCTAGACTAGGTCCTGTCTTACCAATGCTCAAAACTCTCATTATTGACTCAGCTTGGATTCGTTGTGATACGATTGAGACGTTTCTTCCTACTTTCCCTGTTCTTGAGGAATTATCCATGTCTATTAATGAGTGGCCGGATTGGGATGAAACCGTGACAAGTGCAAGCCTCAGGAAGCTAAGTATCTTTACCATTGGCTGTGAAAACTTTTCAAATCCAAAGAGCATCTCTTTTGATATCCCAAGTCTGGTTTACTTTGAGTATTATGATATGGTTGCGGAGGATTATCCAAAAGTTAACTTGACAAGCGTAGTTGAGGCTCGAATCAGCCTTTTATTAGATCAAGATCAAATCAAGCGAGGAAGAGCGCCAAATAACGATGAGGACGACGTTCTTCTGCGTCTTCGAAATGGGTGGAAGCTTATGAGTGGCATAAGAAATGTTCAGAAACTTTACATATCTTTAGATACTCTCCAGGTGCTTTCTTTATGCTGTAAATCGATGCCGGTGTTCAACAACCTCAAATTGTTAAGTGTTAAGACTGCCGAGAATGAAGGATGGGAGGGAATGCCGGTTCTCTTAAGGAACTGCCCACATTTAGAAACACTGGTCTTTGAGGGTCTAAGACATTTTGTGACCAATAAATGTGGGGATGCTTGTGACTACGTGTCTAGGGAAGACAAAGGCCGTTCGCTCGTGTCTTGTCCGGTGAAGAAGTTACAGATCAAAGGGTTTCGAGGAACAATTAGAGAGTTAGAGATGATAAAGCATTTCTTGTACTCTTTTAGGTGTTTGGAGAAGGTAGAGATTTATGCTGAAGAGAAGGGTCGCACTCGCACAGACCTTGAAGTCCCTGGGATGTTTGAACTTATTGCGCGGATGCTCAGACTCTACAACGAGTTCTATAGTTGCGATGTTCAGTTCCTGGTGCGTAGTTCCTTGGATAAGAAGTGGACTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

417

Amino Acids

48.05

Weight (kDa)

5.77

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 38 2.3e-09 F-box domain
F-box-like PF12937 4 - 35 1.2e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1136
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 2 cut(s) 19, 274
AccII CGCG 1 cut(s) 1165
AciI CCGC 2 cut(s) 566, 1165
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 422
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 1125
AfaI GTAC 1 cut(s) 1067
AfiI CCNNNNNNNGG 2 cut(s) 99, 535
AflII CTTAAG 1 cut(s) 868
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 4 cut(s) 501, 802, 1136, 1154
AhdI GACNNNNNGTC 1 cut(s) 955
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 3 cut(s) 762, 1141, 1212
AloI GAACNNNNNNTCC 2 cut(s) 846, 878
AluBI AGCT 4 cut(s) 180, 341, 466, 709
AluI AGCT 4 cut(s) 180, 341, 466, 709
Alw26I GTCTC 2 cut(s) 94, 359
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 1213
AoxI GGCC 2 cut(s) 422, 973
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 168
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 658, 1165
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 1009
AsuII TTCGAA 1 cut(s) 694
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 458
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 2 cut(s) 683, 972
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 840
BceAI ACGGC 1 cut(s) 960
BciT130I CCWGG 3 cut(s) 764, 1143, 1214
BcoDI GTCTC 2 cut(s) 94, 359
BfaI CTAG 3 cut(s) 291, 296, 960
BfmI CTRYAG 1 cut(s) 1192
BfoI RGCGCY 1 cut(s) 659
BfrI CTTAAG 1 cut(s) 868
BisI GCNGC 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 3 cut(s) 764, 1143, 1214
Bme18I GGWCC 1 cut(s) 299
BmeRI GACNNNNNGTC 1 cut(s) 955
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 764, 1143, 1214
BmsI GCATC 6 cut(s) 89, 271, 522, 780, 931, 1158
BpiI GAAGAC 2 cut(s) 683, 972
BpmI CTGGAG 1 cut(s) 746
Bpu1102I GCTNAGC 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 230, 413
Bsa29I ATCGAT 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 955
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 1141, 1142, 1227
BsaWI WCCGGW 1 cut(s) 994
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 535
Bse118I RCCGGY 2 cut(s) 793, 859
Bse1I ACTGG 2 cut(s) 262, 900
Bse21I CCTNAGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 3 cut(s) 764, 1143, 1214
BseCI ATCGAT 1 cut(s) 788
BseDI CCNNGG 3 cut(s) 1141, 1142, 1227
BseGI GGATG 6 cut(s) 265, 439, 851, 946, 1152, 1173
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 99, 535
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 4 cut(s) 167, 351, 472, 1186
BseNI ACTGG 2 cut(s) 262, 900
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 1230
Bsh1236I CGCG 1 cut(s) 1165
BshFI GGCC 2 cut(s) 424, 975
BshVI ATCGAT 1 cut(s) 788
BsiSI CCGG 4 cut(s) 425, 794, 860, 995
BslFI GGGAC 2 cut(s) 107, 1124
BslI CCNNNNNNNGG 2 cut(s) 99, 535
BsmAI GTCTC 2 cut(s) 94, 359
BsmBI CGTCTC 1 cut(s) 359
BsmFI GGGAC 2 cut(s) 107, 1124
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 2 cut(s) 424, 975
Bsp119I TTCGAA 1 cut(s) 694
Bsp143I GATC 4 cut(s) 4, 628, 634, 1011
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 2 cut(s) 566, 1165
BspANI GGCC 2 cut(s) 424, 975
BspCNI CTCAG 4 cut(s) 168, 350, 471, 1185
BspDI ATCGAT 1 cut(s) 788
BspFNI CGCG 1 cut(s) 1165
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 646
BspT104I TTCGAA 1 cut(s) 694
BspTI CTTAAG 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 209
BsrFI RCCGGY 2 cut(s) 793, 859
BsrI ACTGG 2 cut(s) 262, 900
BssAI RCCGGY 2 cut(s) 793, 859
BssECI CCNNGG 3 cut(s) 1141, 1142, 1227
BssMI GATC 4 cut(s) 4, 628, 634, 1011
BssSI CACGAG 1 cut(s) 983
BssT1I CCWWGG 1 cut(s) 1227
Bst2BI CACGAG 1 cut(s) 983
Bst2UI CCWGG 3 cut(s) 764, 1143, 1214
Bst4CI ACNGT 2 cut(s) 442, 1251
Bst6I CTCTTC 5 cut(s) 14, 138, 146, 646, 1101
BstAFI CTTAAG 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 955
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 2 cut(s) 216, 454
BstDEI CTNAG 6 cut(s) 176, 337, 458, 467, 911, 1172
BstF5I GGATG 6 cut(s) 265, 439, 851, 946, 1152, 1173
BstFNI CGCG 1 cut(s) 1165
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 2 cut(s) 658, 1165
BstKTI GATC 4 cut(s) 7, 631, 637, 1014
BstMAI GTCTC 2 cut(s) 94, 359
BstMBI GATC 4 cut(s) 4, 628, 634, 1011
BstMWI GCNNNNNNNGC 2 cut(s) 77, 215
BstNI CCWGG 3 cut(s) 764, 1143, 1214
BstSCI CCNGG 3 cut(s) 762, 1141, 1212
BstSFI CTRYAG 1 cut(s) 1192
BstUI CGCG 1 cut(s) 1165
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 683, 972
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 788
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 2 cut(s) 424, 975
BsuTUI ATCGAT 1 cut(s) 788
BtgZI GCGATG 1 cut(s) 1215
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 6 cut(s) 265, 439, 851, 946, 1152, 1173
BtsIMutI CAGTG 1 cut(s) 893
Cac8I GCNNGC 2 cut(s) 216, 454
CaiI CAGNNNCTG 1 cut(s) 1213
CfoI GCGC 2 cut(s) 658, 1165
Cfr10I RCCGGY 2 cut(s) 793, 859
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 788
CseI GACGC 1 cut(s) 677
Csp6I GTAC 1 cut(s) 1066
CspCI CAANNNNNGTGG 2 cut(s) 916, 951
CviAII CATG 2 cut(s) 184, 406
CviQI GTAC 1 cut(s) 1066
DdeI CTNAG 6 cut(s) 176, 337, 458, 467, 911, 1172
DpnI GATC 4 cut(s) 6, 630, 636, 1013
DpnII GATC 4 cut(s) 4, 628, 634, 1011
DrdI GACNNNNNNGTC 1 cut(s) 1136
DriI GACNNNNNGTC 1 cut(s) 955
DseDI GACNNNNNNGTC 1 cut(s) 1136
EaeI YGGCCR 1 cut(s) 422
Eam1104I CTCTTC 5 cut(s) 14, 138, 146, 646, 1101
Eam1105I GACNNNNNGTC 1 cut(s) 955
EarI CTCTTC 5 cut(s) 14, 138, 146, 646, 1101
Eco130I CCWWGG 1 cut(s) 1227
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 1125
Eco81I CCTNAGG 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 762, 1141, 1212
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 1227
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 2 cut(s) 187, 409
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 2 cut(s) 107, 1124
FatI CATG 2 cut(s) 183, 405
FblI GTMKAC 2 cut(s) 19, 274
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 6 cut(s) 252, 446, 858, 953, 1159, 1180
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 291, 296, 960
GlaI GCGC 2 cut(s) 657, 1164
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 424, 975
HapII CCGG 4 cut(s) 425, 794, 860, 995
HgaI GACGC 1 cut(s) 677
HhaI GCGC 2 cut(s) 658, 1165
Hin1II CATG 2 cut(s) 187, 409
Hin6I GCGC 2 cut(s) 656, 1163
HinP1I GCGC 2 cut(s) 656, 1163
HincII GTYRAC 2 cut(s) 275, 586
HindII GTYRAC 2 cut(s) 275, 586
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 5 cut(s) 221, 335, 346, 612, 1176
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 4 cut(s) 425, 794, 860, 995
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 5 cut(s) 20, 275, 541, 586, 1242
Hpy188I TCNGA 2 cut(s) 735, 1175
Hpy188III TCNNGA 4 cut(s) 131, 392, 460, 632
Hpy8I GTNNAC 5 cut(s) 20, 275, 541, 586, 1242
Hpy99I CGWCG 2 cut(s) 276, 680
HpyAV CCTTC 4 cut(s) 61, 836, 1081, 1105
HpyCH4III ACNGT 2 cut(s) 442, 1251
HpyCH4IV ACGT 4 cut(s) 271, 368, 678, 954
HpyCH4V TGCA 4 cut(s) 116, 214, 452, 1247
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 215
HpyF3I CTNAG 6 cut(s) 176, 337, 458, 467, 911, 1172
HpySE526I ACGT 4 cut(s) 271, 368, 678, 954
Hsp92II CATG 2 cut(s) 187, 409
HspAI GCGC 2 cut(s) 656, 1163
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 4 cut(s) 4, 628, 634, 1011
LguI GCTCTTC 1 cut(s) 646
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 6 cut(s) 89, 271, 522, 780, 931, 1158
MaeI CTAG 3 cut(s) 291, 296, 960
MaeII ACGT 4 cut(s) 271, 368, 678, 954
MaeIII GTNAC 4 cut(s) 442, 922, 947, 1005
MalI GATC 4 cut(s) 6, 630, 636, 1013
MboI GATC 4 cut(s) 4, 628, 634, 1011
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 168, 398, 812, 1032
MlyI GAGTC 2 cut(s) 329, 1170
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 6 cut(s) 231, 414, 585, 818, 825, 869
MspCI CTTAAG 1 cut(s) 868
MspI CCGG 4 cut(s) 425, 794, 860, 995
MspR9I CCNGG 3 cut(s) 764, 1143, 1214
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 3 cut(s) 764, 1143, 1214
MvnI CGCG 1 cut(s) 1165
MwoI GCNNNNNNNGC 2 cut(s) 77, 215
NdeII GATC 4 cut(s) 4, 628, 634, 1011
NlaIII CATG 2 cut(s) 187, 409
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 3 cut(s) 442, 922, 947
NspV TTCGAA 1 cut(s) 694
PasI CCCWGGG 1 cut(s) 1142
PciSI GCTCTTC 1 cut(s) 646
PcsI WCGNNNNNNNCGW 2 cut(s) 365, 672
PctI GAATGC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 221, 346, 612
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 329, 1170
PpsI GAGTC 2 cut(s) 329, 1170
Ppu21I YACGTR 1 cut(s) 955
PpuMI RGGWCCY 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 3 cut(s) 762, 1141, 1212
PspGI CCWGG 3 cut(s) 762, 1141, 1212
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 1213
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 297
RsaI GTAC 1 cut(s) 1067
RsaNI GTAC 1 cut(s) 1066
SalI GTCGAC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 646
SaqAI TTAA 6 cut(s) 231, 414, 585, 818, 825, 869
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 4 cut(s) 4, 628, 634, 1011
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 329, 1170
ScrFI CCNGG 3 cut(s) 764, 1143, 1214
SfaNI GCATC 6 cut(s) 89, 271, 522, 780, 931, 1158
SfcI CTRYAG 1 cut(s) 1192
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 3 cut(s) 245, 392, 868
SmoI CTYRAG 3 cut(s) 245, 392, 868
Sse9I AATT 4 cut(s) 168, 398, 812, 1032
SsiI CCGC 2 cut(s) 566, 1165
SspMI CTAG 3 cut(s) 291, 296, 960
StyD4I CCNGG 3 cut(s) 762, 1141, 1212
StyI CCWWGG 1 cut(s) 1227
TaaI ACNGT 2 cut(s) 442, 1251
TaiI ACGT 4 cut(s) 274, 371, 681, 957
TaqI TCGA 5 cut(s) 274, 610, 694, 788, 1024
TasI AATT 4 cut(s) 168, 398, 812, 1032
TatI WGTACW 1 cut(s) 1065
TfiI GAWTC 3 cut(s) 221, 346, 612
Tru1I TTAA 6 cut(s) 231, 414, 585, 818, 825, 869
Tru9I TTAA 6 cut(s) 231, 414, 585, 818, 825, 869
TscAI CASTG 1 cut(s) 900
TseFI GTSAC 3 cut(s) 442, 922, 947
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 3 cut(s) 442, 922, 947
TspDTI ATGAA 5 cut(s) 156, 172, 254, 450, 855
TspRI CASTG 1 cut(s) 900
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 1 cut(s) 868
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 1 cut(s) 168
XmiI GTMKAC 2 cut(s) 19, 274
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 3 cut(s) 291, 296, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.