AT3G58820

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Forward (+)
21752533 .. 21754681
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58820.1

Sequence Viewer

Length: 1242 bp
ATGGATGGTGTTAGCAGTCTACCAAACGAGCTTCTTTGTCACATATTGTCCTTCCTTACCACAAAGGAGGCTGCTTTGACTTCTATTCTCTCCAAGAGGTGGCGCAATCTCATTGCATTTGTTCCTAATCTTTACATTGATGACACTGTGTTTCTCCATCCAGAAGAGGGTAAGCGGGATAGGCCCGAAATTATACAGAGCTTCATGGATTTTGTGGATAGAATACTGGCTTTGCAGGGTAATTATCCCATTAAGAAATGCTCCCTCAAGTGTTTAACCGAGGTTGATTCAGTTCGTGTGGATGCTTGGATAAGTAATGTGTTGGCGCGTGGTGTTACGGACCTTGATCTATTAATCATCTTGGATTGTGAGAGTGATGATAACTATCGGCTGTCTCCAAAATGTCTCCAGAGCAGCACACTAGTTAGCCTGAAAATAGACGGTGGAATTGATATTGCTCGGGTTGATAACTTTGACATTCTTCTTCTTGCTTTGCCTGCACTTGAGGAATTAGCCCTGGTTGATGTAATCTGGAAAGATGAGGATGATTACCCACTAGTTAATATGAAAAACTTATTTGATGCTCGAATCATCTTCATGCTACAACTCCCGGGAGCTAGAGAACCAGATGATGATCATTGGTTCGACCAAAACGTTGCTCTCAGATATAGCAATGTGTGGAAACTCTTTCTTGGCTTACAAAATGTTCCAAATCTTTACTTGTCTCCTGATACTCTCAAGGTGCTTTCTCTATATTGTGAATCGATGCCGGTGTTCAAAAACCTCAAATCATTAGCTATTAAGAGTGGCAAGGAACGAGGTTGGCAGGCAATCCCAGTTCTTCTAAGGAACTGTCCACATTTAGAAACTCTAGTCATTGAGGGTGTCTTGCACAATGTCACAGATAAATGTGGGGATGCTTGTGACTGCATTTCTAGGGAGGACAAAGGTCGTTCGCTGACATCTTGTCCAGTAAAAATGTTAGAGATTCGAGGGTTTAGAGGAACAATGAAAGAGATGACAATGATGAAGCATTTCTTGGACTATTTTCTGTGTCTGAAGGCGATGAACATCTATGTTGAAGAGAATGATCCTACAGAGCTCAGATTCCCTGAAGTGTCTAAATGTATCATGCAGATGATGGAAGAATACAACAAGTTATCGAGTTGCAACGTCGAACTCCTTGTGACTGATTACTTTTACTTCTCTGAGAAGTGGACTGCAAAAGGAAGAATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

413

Amino Acids

47.33

Weight (kDa)

5.03

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 39 1.2e-08 F-box domain
F-box-like PF12937 5 - 38 2.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 19
AccII CGCG 1 cut(s) 328
AciI CCGC 1 cut(s) 175
AclI AACGTT 1 cut(s) 654
AclWI GGATC 1 cut(s) 1085
AcsI RAATTY 1 cut(s) 1233
AcuI CTGAAG 2 cut(s) 1079, 1134
AfiI CCNNNNNNNGG 2 cut(s) 99, 167
AgsI TTSAA 2 cut(s) 778, 1082
AhdI GACNNNNNGTC 1 cut(s) 966
AhlI ACTAGT 2 cut(s) 421, 556
AjnI CCWGG 1 cut(s) 516
AjuI GAANNNNNNNTTGG 2 cut(s) 1022, 1054
AluBI AGCT 5 cut(s) 31, 201, 617, 797, 1102
AluI AGCT 5 cut(s) 31, 201, 617, 797, 1102
Alw21I GWGCWC 1 cut(s) 1104
Alw26I GTCTC 3 cut(s) 399, 410, 729
AlwI GGATC 1 cut(s) 1085
Ama87I CYCGRG 2 cut(s) 459, 610
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 71, 414
ApoI RAATTY 1 cut(s) 1233
AseI ATTAAT 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 105, 328
AspS9I GGNCC 2 cut(s) 183, 340
AsuC2I CCSGG 2 cut(s) 611, 612
AvaI CYCGRG 2 cut(s) 459, 610
AvaII GGWCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 1104
Bbv12I GWGCWC 1 cut(s) 1104
BbvI GCAGC 2 cut(s) 58, 426
BccI CCATC 2 cut(s) 165, 1135
BciT130I CCWGG 1 cut(s) 518
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 2 cut(s) 611, 612
BcoDI GTCTC 3 cut(s) 399, 410, 729
BcuI ACTAGT 2 cut(s) 421, 556
BfaI CTAG 5 cut(s) 422, 557, 618, 872, 936
BfmI CTRYAG 1 cut(s) 1095
BisI GCNGC 2 cut(s) 72, 415
BlsI GCNGC 2 cut(s) 73, 416
Bme1390I CCNGG 3 cut(s) 518, 611, 612
Bme18I GGWCC 1 cut(s) 340
BmeRI GACNNNNNGTC 1 cut(s) 966
BmeT110I CYCGRG 2 cut(s) 459, 610
BmgT120I GGNCC 2 cut(s) 183, 340
BmrFI CCNGG 3 cut(s) 518, 611, 612
BmrI ACTGGG 1 cut(s) 830
BmsI GCATC 4 cut(s) 292, 571, 756, 907
BmuI ACTGGG 1 cut(s) 830
BoxI GACNNNNGTC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 392
BpuEI CTTGAG 3 cut(s) 251, 524, 722
BpuMI CCSGG 2 cut(s) 611, 612
Bsa29I ATCGAT 1 cut(s) 764
BsaBI GATNNNNATC 3 cut(s) 384, 633, 1070
BsaJI CCNNGG 3 cut(s) 279, 516, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 167
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 3 cut(s) 231, 836, 971
Bse3DI GCAATG 2 cut(s) 111, 679
Bse8I GATNNNNATC 3 cut(s) 384, 633, 1070
BseBI CCWGG 1 cut(s) 518
BseCI ATCGAT 1 cut(s) 764
BseDI CCNNGG 3 cut(s) 279, 516, 610
BseGI GGATG 5 cut(s) 10, 157, 307, 550, 922
BseJI GATNNNNATC 3 cut(s) 384, 633, 1070
BseLI CCNNNNNNNGG 2 cut(s) 99, 167
BseMI GCAATG 2 cut(s) 111, 679
BseMII CTCAG 3 cut(s) 676, 1117, 1200
BseNI ACTGG 3 cut(s) 231, 836, 971
BseXI GCAGC 2 cut(s) 58, 426
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 1104
BsiHKCI CYCGRG 2 cut(s) 459, 610
BsiSI CCGG 2 cut(s) 611, 770
BslI CCNNNNNNNGG 2 cut(s) 99, 167
BsmAI GTCTC 3 cut(s) 399, 410, 729
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 2 cut(s) 459, 610
Bsp1286I GDGCHC 1 cut(s) 1104
Bsp143I GATC 3 cut(s) 346, 634, 1090
BspACI CCGC 1 cut(s) 175
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 3 cut(s) 675, 1116, 1201
BspDI ATCGAT 1 cut(s) 764
BspFNI CGCG 1 cut(s) 328
BspPI GGATC 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 111, 679
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 3 cut(s) 231, 836, 971
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 3 cut(s) 279, 516, 610
BssMI GATC 3 cut(s) 346, 634, 1090
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 3 cut(s) 148, 443, 854
Bst6I CTCTTC 2 cut(s) 159, 1077
BstC8I GCNNGC 2 cut(s) 498, 828
BstDEI CTNAG 4 cut(s) 662, 845, 1103, 1209
BstF5I GGATG 5 cut(s) 10, 157, 307, 550, 922
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 2 cut(s) 105, 328
BstKTI GATC 3 cut(s) 349, 637, 1093
BstMAI GTCTC 3 cut(s) 399, 410, 729
BstMBI GATC 3 cut(s) 346, 634, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 181, 497
BstNI CCWGG 1 cut(s) 518
BstPAI GACNNNNGTC 1 cut(s) 948
BstSCI CCNGG 3 cut(s) 516, 609, 610
BstSFI CTRYAG 1 cut(s) 1095
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 58, 426
Bsu15I ATCGAT 1 cut(s) 764
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 764
BtgZI GCGATG 1 cut(s) 1079
BtsCI GGATG 5 cut(s) 10, 157, 307, 550, 922
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 498, 828
CfoI GCGC 2 cut(s) 105, 328
Cfr10I RCCGGY 1 cut(s) 769
Cfr13I GGNCC 2 cut(s) 183, 340
Cfr9I CCCGGG 1 cut(s) 610
ClaI ATCGAT 1 cut(s) 764
CviAII CATG 3 cut(s) 205, 598, 1132
DdeI CTNAG 4 cut(s) 662, 845, 1103, 1209
DpnI GATC 3 cut(s) 348, 636, 1092
DpnII GATC 3 cut(s) 346, 634, 1090
DriI GACNNNNNGTC 1 cut(s) 966
Eam1104I CTCTTC 2 cut(s) 159, 1077
Eam1105I GACNNNNNGTC 1 cut(s) 966
EarI CTCTTC 2 cut(s) 159, 1077
Ecl136II GAGCTC 1 cut(s) 1102
Eco24I GRGCYC 1 cut(s) 1104
Eco47I GGWCC 1 cut(s) 340
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 2 cut(s) 1079, 1134
Eco88I CYCGRG 2 cut(s) 459, 610
EcoICRI GAGCTC 1 cut(s) 1102
EcoRI GAATTC 1 cut(s) 1233
EcoRII CCWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 1104
FaeI CATG 3 cut(s) 208, 601, 1135
FaiI YATR 9 cut(s) 44, 194, 206, 566, 599, 669, 754, 1077, 1133
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FatI CATG 3 cut(s) 204, 597, 1131
FauI CCCGC 1 cut(s) 168
FbaI TGATCA 1 cut(s) 634
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 72, 415
FokI GGATG 5 cut(s) 17, 144, 314, 557, 929
FriOI GRGCYC 1 cut(s) 1104
Fsp4HI GCNGC 2 cut(s) 72, 415
FspBI CTAG 5 cut(s) 422, 557, 618, 872, 936
GlaI GCGC 2 cut(s) 104, 327
GluI GCNGC 2 cut(s) 72, 415
GsuI CTGGAG 1 cut(s) 392
HaeIII GGCC 1 cut(s) 184
HapII CCGG 2 cut(s) 611, 770
HhaI GCGC 2 cut(s) 105, 328
Hin1II CATG 3 cut(s) 208, 601, 1135
Hin6I GCGC 2 cut(s) 103, 326
HinP1I GCGC 2 cut(s) 103, 326
HinfI GANTC 5 cut(s) 287, 588, 761, 988, 1107
HpaII CCGG 2 cut(s) 611, 770
Hpy166II GTNNAC 3 cut(s) 20, 857, 1218
Hpy188I TCNGA 5 cut(s) 665, 1059, 1106, 1210, 1241
Hpy188III TCNNGA 4 cut(s) 161, 409, 532, 728
Hpy8I GTNNAC 3 cut(s) 20, 857, 1218
Hpy99I CGWCG 1 cut(s) 1178
HpyAV CCTTC 2 cut(s) 61, 1054
HpyCH4III ACNGT 3 cut(s) 148, 443, 854
HpyCH4IV ACGT 2 cut(s) 654, 1173
HpyCH4V TGCA 8 cut(s) 116, 235, 500, 892, 930, 1135, 1170, 1223
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 497
HpyF3I CTNAG 4 cut(s) 662, 845, 1103, 1209
HpySE526I ACGT 2 cut(s) 654, 1173
Hsp92II CATG 3 cut(s) 208, 601, 1135
HspAI GCGC 2 cut(s) 103, 326
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 3 cut(s) 346, 634, 1090
LmnI GCTCC 2 cut(s) 266, 614
Lsp1109I GCAGC 2 cut(s) 58, 426
LweI GCATC 4 cut(s) 292, 571, 756, 907
MaeI CTAG 5 cut(s) 422, 557, 618, 872, 936
MaeII ACGT 2 cut(s) 654, 1173
MaeIII GTNAC 5 cut(s) 38, 334, 898, 923, 1186
MalI GATC 3 cut(s) 348, 636, 1092
MboI GATC 3 cut(s) 346, 634, 1090
MboII GAAGA 8 cut(s) 176, 473, 476, 586, 833, 1094, 1157, 1242
MhlI GDGCHC 1 cut(s) 1104
MluCI AATT 5 cut(s) 189, 241, 447, 509, 1233
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 5 cut(s) 252, 275, 353, 561, 801
MslI CAYNNNNRTG 2 cut(s) 596, 1136
MspI CCGG 2 cut(s) 611, 770
MspR9I CCNGG 3 cut(s) 518, 611, 612
MvaI CCWGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 181, 497
NciI CCSGG 2 cut(s) 611, 612
NdeII GATC 3 cut(s) 346, 634, 1090
NlaIII CATG 3 cut(s) 208, 601, 1135
NmuCI GTSAC 4 cut(s) 38, 898, 923, 1186
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 5 cut(s) 287, 588, 761, 988, 1107
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 2 cut(s) 73, 416
PshAI GACNNNNGTC 1 cut(s) 948
PshBI ATTAAT 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 1104
Psp1406I AACGTT 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 516
PspGI CCWGG 1 cut(s) 516
PspPI GGNCC 2 cut(s) 183, 340
RseI CAYNNNNRTG 2 cut(s) 596, 1136
SacI GAGCTC 1 cut(s) 1104
SaqAI TTAA 5 cut(s) 252, 275, 353, 561, 801
SatI GCNGC 2 cut(s) 72, 415
Sau3AI GATC 3 cut(s) 346, 634, 1090
Sau96I GGNCC 2 cut(s) 183, 340
ScrFI CCNGG 3 cut(s) 518, 611, 612
SduI GDGCHC 1 cut(s) 1104
SfaNI GCATC 4 cut(s) 292, 571, 756, 907
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 612
SmiMI CAYNNNNRTG 2 cut(s) 596, 1136
SmlI CTYRAG 3 cut(s) 266, 503, 737
SmoI CTYRAG 3 cut(s) 266, 503, 737
SpeI ACTAGT 2 cut(s) 421, 556
Sse9I AATT 5 cut(s) 189, 241, 447, 509, 1233
SsiI CCGC 1 cut(s) 175
SspMI CTAG 5 cut(s) 422, 557, 618, 872, 936
SstI GAGCTC 1 cut(s) 1104
StyD4I CCNGG 3 cut(s) 516, 609, 610
TaaI ACNGT 3 cut(s) 148, 443, 854
TaiI ACGT 2 cut(s) 657, 1176
TaqI TCGA 6 cut(s) 586, 645, 764, 991, 1163, 1176
TasI AATT 5 cut(s) 189, 241, 447, 509, 1233
TfiI GAWTC 5 cut(s) 287, 588, 761, 988, 1107
Tru1I TTAA 5 cut(s) 252, 275, 353, 561, 801
Tru9I TTAA 5 cut(s) 252, 275, 353, 561, 801
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 4 cut(s) 38, 898, 923, 1186
TseI GCWGC 2 cut(s) 71, 414
Tsp45I GTSAC 4 cut(s) 38, 898, 923, 1186
TspDTI ATGAA 6 cut(s) 193, 581, 586, 1025, 1043, 1082
TspGWI ACGGA 1 cut(s) 353
TspMI CCCGGG 1 cut(s) 610
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 340
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 1 cut(s) 1233
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 5 cut(s) 422, 557, 618, 872, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.