AT5G38386

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003780
Physical Location & Seq
Forward (+)
15362774 .. 15364815
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38386.1

Sequence Viewer

Length: 1212 bp
ATGGATCACTTAAGCAATTTACCAGACGAGCTTCTTTGCCATATTATGTCCTTCCTTACCACCAAGGAGGCTGCTTTGATATCGGTTCTCTCCAAAAGGTGGCGCAATTTGATTGCATTTGTCCCTAATCTTGATATTTTTGACTGTGATATTCTGCATTGGGAGGTGCGTAAAGAGGAAAGGGACGATATTCGACAGCTCTTCATGGATTTTGTGGATAGAGTTTTGGCATTGCAAGGTAACTCTCCCTTAAAGAAATTCTCCCTCTGTTGTGGCGGCGGTTCTTATTCGGATAGAGTGGATTGTTGGATACAGAATGTGATGGTGCGTGGTGTTTCGGAGCTTGATCTATCAATGATTTTTGATACCTCTTATCATATGTATCCACAAGTTTTCGAGAACAAGAAACTAAATTTTGAGATTTTTCTTCGTGCTTTGCCTGCGCTTGAGGAATTAGTCATGAATCATATATACTGGAAAGAATTGGATGTGAATGTGCATGTATCTGTATCAAGTGCAAGCCTCAAGACCCTAACAATAAAATGCATCGTTTGTTTACATACTAAGTCATTTGATACACCTAGTCTTGCTTACTTATCTTACTCTGATTATGCCATGGGAGATTATCCCGTAGCTAAAATGGAAAACTTGTTTGAGGCTCGAATCAGCCTTTTTGTACCTGAAGACGATATCAGCCGACTTATGAATAGCATTCGAAATGTTCGGTATCTCTATTTCTCTCGTGATACTCTTGAGGTGCTTTCTCTATGCTGTGAATCGATGCCAGTGTTCAAAAACCTCAAATCTTTATCTATCAAGAGTGTTGAGAGTCGAGGATGGCAAGCAATGCCAGTTCTTCTAAGGAACTGTCCACATTTAGAAACTCTAGTCCTTGAGGCTCTCTTGCACCATGTAACTGATAAATGCGGGGATGCTTGTGCCTGCGTCTCTCGGGAGGAGAAAGGTCGTTCGCTCAAATCTTGTCCAGTAAAAGTGTTAGAGATTAAAGAGTTTCAAGGAACAATGAAAGAGATGCACATGATAAAACATTTCCTGGACTATCTTCCGTGTTTGAAGGAGATGAAAATCTCCTATATGAAAAAGAATGATCATACTACACAGTTCAGAGTCATCCCTCAAGTTATTGCAGAGATGGTGGAACACTACAACAAGTTATCTAATTGCAATGTCCAGCTTGTAGTGAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

403

Amino Acids

46.54

Weight (kDa)

6.28

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 39 1.6e-09 F-box domain
F-box-like PF12937 4 - 38 1.5e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AciI CCGC 3 cut(s) 276, 279, 927
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 257, 412
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 1 cut(s) 99
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 3 cut(s) 793, 1016, 1075
AjnI CCWGG 1 cut(s) 1053
AluBI AGCT 5 cut(s) 31, 199, 343, 635, 1195
AluI AGCT 5 cut(s) 31, 199, 343, 635, 1195
Alw26I GTCTC 1 cut(s) 952
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 951
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 257, 412
AspLEI GCGC 2 cut(s) 105, 445
AsuII TTCGAA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 951
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 316, 831, 1147
BciT130I CCWGG 1 cut(s) 1055
BciVI GTATCC 2 cut(s) 303, 393
BclI TGATCA 1 cut(s) 1108
BcoDI GTCTC 1 cut(s) 952
BfaI CTAG 2 cut(s) 582, 887
BfrI CTTAAG 1 cut(s) 10
BfuI GTATCC 2 cut(s) 303, 393
BisI GCNGC 2 cut(s) 72, 277
BlsI GCNGC 2 cut(s) 73, 278
Bme1390I CCNGG 1 cut(s) 1055
BmeT110I CYCGRG 1 cut(s) 951
BmrFI CCNGG 1 cut(s) 1055
BmsI GCATC 4 cut(s) 555, 771, 922, 1023
BpiI GAAGAC 1 cut(s) 690
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 5 cut(s) 467, 509, 773, 914, 1122
Bsa29I ATCGAT 1 cut(s) 779
BsaBI GATNNNNATC 1 cut(s) 1085
BsaJI CCNNGG 2 cut(s) 63, 615
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 4 cut(s) 479, 785, 851, 986
Bse3DI GCAATG 3 cut(s) 230, 852, 1192
Bse8I GATNNNNATC 1 cut(s) 1085
BseBI CCWGG 1 cut(s) 1055
BseCI ATCGAT 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 63, 615
BseGI GGATG 4 cut(s) 493, 842, 937, 1131
BseJI GATNNNNATC 1 cut(s) 1085
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMI GCAATG 3 cut(s) 230, 852, 1192
BseNI ACTGG 4 cut(s) 479, 785, 851, 986
BseRI GAGGAG 1 cut(s) 971
BseXI GCAGC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 779
BsiHKCI CYCGRG 1 cut(s) 951
BslFI GGGAC 2 cut(s) 107, 197
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 952
BsmBI CGTCTC 1 cut(s) 952
BsmFI GGGAC 2 cut(s) 107, 197
BsmI GAATGC 1 cut(s) 711
BsoBI CYCGRG 1 cut(s) 951
Bsp119I TTCGAA 1 cut(s) 715
Bsp143I GATC 3 cut(s) 4, 346, 1108
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 3 cut(s) 276, 279, 927
BspDI ATCGAT 1 cut(s) 779
BspHI TCATGA 1 cut(s) 459
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 715
BspTI CTTAAG 1 cut(s) 10
BsrDI GCAATG 3 cut(s) 230, 852, 1192
BsrI ACTGG 4 cut(s) 479, 785, 851, 986
BssECI CCNNGG 2 cut(s) 63, 615
BssMI GATC 3 cut(s) 4, 346, 1108
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 2 cut(s) 63, 615
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 1055
Bst4CI ACNGT 3 cut(s) 146, 869, 1122
Bst6I CTCTTC 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 847
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 441, 520, 843, 943
BstDEI CTNAG 2 cut(s) 564, 860
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 4 cut(s) 493, 842, 937, 1131
BstHHI GCGC 2 cut(s) 105, 445
BstKTI GATC 3 cut(s) 7, 349, 1111
BstMAI GTCTC 1 cut(s) 952
BstMBI GATC 3 cut(s) 4, 346, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 440, 847
BstNI CCWGG 1 cut(s) 1055
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 1053
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 690
Bsu15I ATCGAT 1 cut(s) 779
BsuI GTATCC 2 cut(s) 303, 393
BsuTUI ATCGAT 1 cut(s) 779
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 4 cut(s) 493, 842, 937, 1131
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 4 cut(s) 441, 520, 843, 943
CciI TCATGA 1 cut(s) 459
CfoI GCGC 2 cut(s) 105, 445
ClaI ATCGAT 1 cut(s) 779
CseI GACGC 1 cut(s) 934
Csp6I GTAC 1 cut(s) 677
CviAII CATG 6 cut(s) 205, 460, 500, 616, 911, 1039
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 2 cut(s) 564, 860
DpnI GATC 3 cut(s) 6, 348, 1110
DpnII GATC 3 cut(s) 4, 346, 1108
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 63, 615
Eco32I GATATC 2 cut(s) 81, 691
Eco57I CTGAAG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 1053
EcoRV GATATC 2 cut(s) 81, 691
EcoT14I CCWWGG 2 cut(s) 63, 615
EcoT22I ATGCAT 1 cut(s) 548
ErhI CCWWGG 2 cut(s) 63, 615
Esp3I CGTCTC 1 cut(s) 952
FaeI CATG 6 cut(s) 208, 463, 503, 619, 914, 1042
FaqI GGGAC 2 cut(s) 107, 197
FatI CATG 6 cut(s) 204, 459, 499, 615, 910, 1038
FauI CCCGC 1 cut(s) 920
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 2 cut(s) 72, 277
FokI GGATG 4 cut(s) 500, 849, 944, 1118
Fsp4HI GCNGC 2 cut(s) 72, 277
FspBI CTAG 2 cut(s) 582, 887
GlaI GCGC 2 cut(s) 104, 444
GluI GCNGC 2 cut(s) 72, 277
HgaI GACGC 1 cut(s) 934
HhaI GCGC 2 cut(s) 105, 445
Hin1II CATG 6 cut(s) 208, 463, 503, 619, 914, 1042
Hin6I GCGC 2 cut(s) 103, 443
HinP1I GCGC 2 cut(s) 103, 443
HinfI GANTC 5 cut(s) 463, 663, 776, 829, 1128
Hpy166II GTNNAC 2 cut(s) 557, 872
Hpy188I TCNGA 4 cut(s) 292, 340, 607, 1127
Hpy188III TCNNGA 8 cut(s) 131, 397, 460, 526, 743, 752, 817, 953
Hpy8I GTNNAC 2 cut(s) 557, 872
HpyAV CCTTC 2 cut(s) 61, 1069
HpyCH4III ACNGT 3 cut(s) 146, 869, 1122
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 847
HpyF3I CTNAG 2 cut(s) 564, 860
Hsp92II CATG 6 cut(s) 208, 463, 503, 619, 914, 1042
HspAI GCGC 2 cut(s) 103, 443
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 3 cut(s) 4, 346, 1108
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 4 cut(s) 555, 771, 922, 1023
MaeI CTAG 2 cut(s) 582, 887
MaeIII GTNAC 2 cut(s) 239, 913
MalI GATC 3 cut(s) 6, 348, 1110
MboI GATC 3 cut(s) 4, 346, 1108
MboII GAAGA 5 cut(s) 193, 419, 695, 848, 1055
MluCI AATT 7 cut(s) 16, 106, 257, 412, 452, 482, 1180
MlyI GAGTC 2 cut(s) 838, 1137
MmeI TCCRAC 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 548
MseI TTAA 4 cut(s) 11, 251, 1005, 1210
MspCI CTTAAG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 1055
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 1055
MwoI GCNNNNNNNGC 2 cut(s) 440, 847
NcoI CCATGG 1 cut(s) 615
NdeI CATATG 1 cut(s) 378
NdeII GATC 3 cut(s) 4, 346, 1108
NlaIII CATG 6 cut(s) 208, 463, 503, 619, 914, 1042
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 503
NspV TTCGAA 1 cut(s) 715
PagI TCATGA 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 463, 663, 776
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 1053
PkrI GCNGC 2 cut(s) 73, 278
PleI GAGTC 2 cut(s) 837, 1136
PpsI GAGTC 2 cut(s) 837, 1136
Psp6I CCWGG 1 cut(s) 1053
PspGI CCWGG 1 cut(s) 1053
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 4 cut(s) 11, 251, 1005, 1210
SatI GCNGC 2 cut(s) 72, 277
Sau3AI GATC 3 cut(s) 4, 346, 1108
SchI GAGTC 2 cut(s) 838, 1137
ScrFI CCNGG 1 cut(s) 1055
SfaNI GCATC 4 cut(s) 555, 771, 922, 1023
SfuI TTCGAA 1 cut(s) 715
SmlI CTYRAG 6 cut(s) 10, 446, 524, 752, 893, 1137
SmoI CTYRAG 6 cut(s) 10, 446, 524, 752, 893, 1137
Sse9I AATT 7 cut(s) 16, 106, 257, 412, 452, 482, 1180
SsiI CCGC 3 cut(s) 276, 279, 927
SspMI CTAG 2 cut(s) 582, 887
StyD4I CCNGG 1 cut(s) 1053
StyI CCWWGG 2 cut(s) 63, 615
TaaI ACNGT 3 cut(s) 146, 869, 1122
TaqI TCGA 6 cut(s) 193, 396, 661, 715, 779, 832
TasI AATT 7 cut(s) 16, 106, 257, 412, 452, 482, 1180
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 3 cut(s) 463, 663, 776
Tru1I TTAA 4 cut(s) 11, 251, 1005, 1210
Tru9I TTAA 4 cut(s) 11, 251, 1005, 1210
TscAI CASTG 1 cut(s) 792
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 6 cut(s) 193, 476, 719, 1040, 1097, 1112
TspGWI ACGGA 1 cut(s) 1056
TspRI CASTG 1 cut(s) 792
Van91I CCANNNNNTGG 1 cut(s) 99
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 2 cut(s) 257, 412
XceI RCATGY 1 cut(s) 503
XspI CTAG 2 cut(s) 582, 887
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.