AT3G58900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Forward (+)
21772813 .. 21774873
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58900.3

Sequence Viewer

Length: 984 bp
ATGGATCTATTCAGCAGTCTACCAAATGAACTCCTTTATCATATATTGTCCTTCCTATCCACAAAGGAGGCTGCTTTGACATCGGTTCTCTCCAAGAGGTGGCGCAATCTGTTTGCTTTTGTCCCTTACCTCGAGTTTGATGACTCTGTCTTTCTTCATCCAGAAGAGCGTAAGCGGGAAAAAGAAGGAATTTTGCAGAGCTTCATGGATTTTGTGGATAGAGTTTTGGATTTGCATGGTGATTCTCTCATAAAGACGTTCTCCCTCAAGTGTAAAACTGGTGTTGACTCAGATCATGTGGATCGTTGGATATGTAATGTGTTGGCTCGTGGTGTTTCAGACCTTGATCTTTTCATTGATTTCAGAGATTTATATTCTCTGCCTCACGAGGTTGGTGTGAGTAGGACACTTGTTGTGCTGAGAGTAGGAAGTGAATCTGATCTTTATTGGTGGCAGAAGTTTTTATGCTTACCGATGCTTAAAACTCTCGTTCTTGACTCCTGCTGGTTATGTATTGGTCAGTTTCAAATTCTTCTTCTTGCTTGCCCTGCGCTTGAGGAGTTAGACATGACTAATACGCGGTGGAAGGATTCCAATGTGACTGTGTCTAGCTCGATCCTCAAGGAGCTGACTATTGATCTCCATGGTTGTTGTAGCGTAGTTAATCTGAAGAGTCTTTCATTTGATGCTCCAAGTCTTGTTTACTTTTATTACTGTGATTCTCTTGCGGAGGACTATCCACAAGTGAACTTGAAAAACTTGGTCGAGGCTCAAATCAACCTTTTACTAACTCAAGCTCAAATCGAGCAAGTAAGAGCACTAAATAATGAAATGTTGGTGGCTGATGATGTTTTTCCTGGTCTTGGCAATGCTTGGAAGCTCATTACTGGCCTAAGAAATGTTCAACAACTTTACTTGTCTCCTGATACCCTTGAGGTCAGTTTTCTCTCTTTAGTGTATTTCTGGCTGGTTGGGAGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

327

Amino Acids

37.47

Weight (kDa)

4.84

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 38 1e-08 F-box domain
F-box-like PF12937 4 - 37 2.4e-06 F-box-like
LRR_At5g56370 PF24758 100 - 242 9.3e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 19
AccII CGCG 1 cut(s) 580
AciI CCGC 3 cut(s) 175, 580, 728
AclWI GGATC 3 cut(s) 12, 309, 610
AcsI RAATTY 2 cut(s) 189, 528
AcuI CTGAAG 1 cut(s) 689
AfiI CCNNNNNNNGG 2 cut(s) 99, 863
AgsI TTSAA 3 cut(s) 527, 754, 905
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 5 cut(s) 201, 612, 628, 797, 880
AluI AGCT 5 cut(s) 201, 612, 628, 797, 880
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 1 cut(s) 924
AlwI GGATC 3 cut(s) 12, 309, 610
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 889
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 189, 528
AspLEI GCGC 2 cut(s) 105, 553
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 131
BauI CACGAG 2 cut(s) 327, 386
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 924
BfaI CTAG 1 cut(s) 609
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 465, 676
BpuEI CTTGAG 5 cut(s) 251, 575, 605, 777, 953
BsaJI CCNNGG 1 cut(s) 643
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 863
Bse1I ACTGG 2 cut(s) 283, 892
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 99, 863
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 303, 410
BseNI ACTGG 2 cut(s) 283, 892
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 1 cut(s) 891
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 99, 863
BsmAI GTCTC 1 cut(s) 924
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 891
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 820
Bsp143I GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 3 cut(s) 175, 580, 728
BspANI GGCC 1 cut(s) 891
BspCNI CTCAG 2 cut(s) 302, 411
BspFNI CGCG 1 cut(s) 580
BspPI GGATC 3 cut(s) 12, 309, 610
BspQI GCTCTTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 874
BsrI ACTGG 2 cut(s) 283, 892
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
BssSI CACGAG 2 cut(s) 327, 386
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 2 cut(s) 327, 386
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 2 cut(s) 604, 716
Bst6I CTCTTC 2 cut(s) 159, 665
BstC8I GCNNGC 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 289, 419, 893
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 580
BstHHI GCGC 2 cut(s) 105, 553
BstKTI GATC 7 cut(s) 7, 295, 304, 349, 442, 618, 640
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 856
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 891
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 544
CfoI GCGC 2 cut(s) 105, 553
CviAII CATG 5 cut(s) 205, 236, 296, 568, 644
DdeI CTNAG 3 cut(s) 289, 419, 893
DpnI GATC 7 cut(s) 6, 294, 303, 348, 441, 617, 639
DpnII GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
Eam1104I CTCTTC 2 cut(s) 159, 665
EarI CTCTTC 2 cut(s) 159, 665
Eco130I CCWWGG 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 5 cut(s) 208, 239, 299, 571, 647
FaqI GGGAC 1 cut(s) 107
FatI CATG 5 cut(s) 204, 235, 295, 567, 643
FauI CCCGC 1 cut(s) 168
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 104, 552
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 891
HhaI GCGC 2 cut(s) 105, 553
Hin1II CATG 5 cut(s) 208, 239, 299, 571, 647
Hin6I GCGC 2 cut(s) 103, 551
HinP1I GCGC 2 cut(s) 103, 551
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 8 cut(s) 143, 242, 287, 434, 497, 590, 673, 719
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 4 cut(s) 20, 286, 703, 748
Hpy188I TCNGA 5 cut(s) 292, 340, 365, 439, 669
Hpy188III TCNNGA 4 cut(s) 161, 386, 494, 923
Hpy8I GTNNAC 4 cut(s) 20, 286, 703, 748
HpyAV CCTTC 3 cut(s) 61, 179, 580
HpyCH4III ACNGT 2 cut(s) 604, 716
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 196, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 3 cut(s) 289, 419, 893
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 5 cut(s) 208, 239, 299, 571, 647
HspAI GCGC 2 cut(s) 103, 551
Kzo9I GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 625, 694
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 465, 676
MaeI CTAG 1 cut(s) 609
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 598
MalI GATC 7 cut(s) 6, 294, 303, 348, 441, 617, 639
MboI GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
MboII GAAGA 5 cut(s) 146, 176, 524, 527, 682
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 2 cut(s) 189, 528
MlyI GAGTC 4 cut(s) 137, 281, 491, 682
MmeI TCCRAC 1 cut(s) 287
MseI TTAA 2 cut(s) 480, 663
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 1 cut(s) 548
NcoI CCATGG 1 cut(s) 643
NdeII GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
NlaIII CATG 5 cut(s) 208, 239, 299, 571, 647
NmuCI GTSAC 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 4 cut(s) 242, 434, 590, 719
PflFI GACNNNGTC 2 cut(s) 146, 604
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 4 cut(s) 137, 281, 491, 681
PpsI GAGTC 4 cut(s) 137, 281, 491, 681
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspXI VCTCGAGB 1 cut(s) 131
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 2 cut(s) 146, 604
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 480, 663
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 7 cut(s) 4, 292, 301, 346, 439, 615, 637
SchI GAGTC 4 cut(s) 137, 281, 491, 682
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 2 cut(s) 465, 676
Sfr274I CTCGAG 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 6 cut(s) 131, 266, 554, 620, 792, 932
SmoI CTYRAG 6 cut(s) 131, 266, 554, 620, 792, 932
Sse9I AATT 2 cut(s) 189, 528
SsiI CCGC 3 cut(s) 175, 580, 728
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 604, 716
TaiI ACGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 132, 614, 765, 804
TasI AATT 2 cut(s) 189, 528
TfiI GAWTC 4 cut(s) 242, 434, 590, 719
Tru1I TTAA 2 cut(s) 480, 663
Tru9I TTAA 2 cut(s) 480, 663
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 6 cut(s) 42, 146, 193, 343, 669, 843
Tth111I GACNNNGTC 2 cut(s) 146, 604
Van91I CCANNNNNTGG 1 cut(s) 99
XapI RAATTY 2 cut(s) 189, 528
XhoI CTCGAG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.