AT3G59000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Forward (+)
21799248 .. 21801804
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59000.1

Sequence Viewer

Length: 1476 bp
ATGGATCGTGTTGGCAGTCTACCAGACGAGCTTCTTTCTCATATACTGTCATTCCTTACCACAAAGGAGGCTGCTTTGACTTCTCTTCTCTCCAAGAGGTGGCGCTATCTCATTGCTTTTGTTCCTAATCTTGCTTTTGATGACATTGTCTTTCTTCATCCGGAAGAGGGCAAGCCGGAAAGGGATGAAATTAGGCAGAGCTTCATGGATTTTGTAGATAGGGTGTTGGCTCTGCAGGCTGAGTCTCCCATTAAGAAATTCTCCCTCAAGTGTAGAATTGGTGTTGATTCAGATCGTGTGGATGGTTGGATAAGTAATGTGCTAAACCGTGGTGTTTCAGAGCTTGATCTATTAATCATTTTAGGTATGACTATGGAAGATAGCTATCGGCTGTCTCCAAAAGGTTTCGCCAGCAAGACACTAGTTAAGCTGGAAATAGGTTGTGGAATTGATATTAGTTGGGTAGCTGGGAGCATTTTCTTACCAATGCTTAAGACTCTCGTTCTTGACTCTGTTTGGTTTTATGTTGATAAGTTTGAGACTCTACTTCTTGCTTTGCCTGCGCTTGAGGAATTAGTCCTGGTTGATGTAAACTGGTTAGATTCGGATGTCACCATCTCAAATGCAAGCCTCAAGACCCTAACAATAGATTCCGACGGTCATTTAGGCACTTTTTCATTTGATACACCTAGTCTTGTTTATTTCTGTTACTCTGATTATGCTGCGGAAGACTATCCCGTAGTTAAAATGGAAAACTTACGTGAGGCTCGAATCTTCCTTTTGGTTACTGATAATGAAATAGAGCGAGTAAGACTACCAATTAATGATGGATTAGAGGATGCTATGGACAATGTTGTTCTCAGATTTGGACATGTGGGGAAGCTCATGAATGGCATACGAAATGTTGAGTATCTGGAGTTGTCTGCTGATACTCTCGAGGTGCTTTCTCTATGCTGTGAGTCAATGCCAGTGTTCAAAAACCTCAAATCGTTAGCTATTAAAAGTACTGAAGGTCGAGGATGGCAAGCAATGCCAGTTCTTCTAAGGAATTGTCCACATTTAGAGTTTCTACTCATTGAGGGACTCTTGCACCATGTCACAGATAAATGCGGGGATGCTTGTGACTGCGTTCCTCGGGAGGACAAAGGTCGTTCGCTGACATCTTGTCCAGTAAATATGTTAGAGATCCATGGGTTTCGAGGGACAAAGAAAGAGATGCAAATGATAAAACATTTCTTGGACTATTTTCCTAGTTTGAAGGAGATGGACATATATGCTGACGAGGATGGTCCTACAAACCTCGAAGCTCCTGGGATGTTTGAACAAATTACGCAACTTTTTACACTCTACGACGAGTTTTATACTTGTGATGTCCAGTTTATGGTGCGTGGTTCCTTATATAAGAAGCTGACTGCACAGTGTTGTGTCTTCAAGGAAGAAAACTTACCTCATAGATTGGTTCGGACTCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

491

Amino Acids

55.72

Weight (kDa)

4.88

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 38 1.2e-06 F-box-like
F-box PF00646 6 - 39 4.9e-08 F-box domain
LRR_At5g56370 PF24758 100 - 234 1.1e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 99, 1381
AccI GTMKAC 1 cut(s) 19
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 725, 1110
AclWI GGATC 2 cut(s) 12, 1180
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 1029
AfaI GTAC 1 cut(s) 1006
AfiI CCNNNNNNNGG 3 cut(s) 99, 167, 1381
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 4 cut(s) 976, 1258, 1322, 1432
AhdI GACNNNNNGTC 1 cut(s) 1164
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 2 cut(s) 579, 1309
Alw26I GTCTC 3 cut(s) 249, 399, 533
AlwI GGATC 2 cut(s) 12, 1180
Ama87I CYCGRG 2 cut(s) 935, 1134
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 71, 722
ApoI RAATTY 1 cut(s) 257
AseI ATTAAT 2 cut(s) 353, 822
AspLEI GCGC 2 cut(s) 105, 565
AspS9I GGNCC 1 cut(s) 1289
AsuHPI GGTGA 1 cut(s) 604
AvaI CYCGRG 2 cut(s) 935, 1134
AvaII GGWCC 1 cut(s) 1289
BarI GAAGNNNNNNTAC 2 cut(s) 1428, 1460
BbsI GAAGAC 2 cut(s) 735, 1420
BbvI GCAGC 2 cut(s) 58, 709
BccI CCATC 6 cut(s) 296, 623, 821, 1014, 1258, 1280
BciT130I CCWGG 2 cut(s) 581, 1311
BcoDI GTCTC 3 cut(s) 249, 399, 533
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 3 cut(s) 422, 690, 1251
BfmI CTRYAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 106
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 2 cut(s) 72, 723
BlsI GCNGC 2 cut(s) 73, 724
BmcAI AGTACT 1 cut(s) 1006
Bme1390I CCNGG 2 cut(s) 581, 1311
Bme18I GGWCC 1 cut(s) 1289
BmeRI GACNNNNNGTC 1 cut(s) 1164
BmeT110I CYCGRG 2 cut(s) 935, 1134
BmgT120I GGNCC 1 cut(s) 1289
BmiI GGNNCC 1 cut(s) 1393
BmrFI CCNGG 2 cut(s) 581, 1311
BmsI GCATC 3 cut(s) 829, 1105, 1206
BoxI GACNNNNGTC 1 cut(s) 1146
BpiI GAAGAC 2 cut(s) 735, 1420
BpmI CTGGAG 1 cut(s) 935
BpuEI CTTGAG 3 cut(s) 251, 587, 617
BsaAI YACGTR 1 cut(s) 761
BsaBI GATNNNNATC 2 cut(s) 291, 384
BsaJI CCNNGG 4 cut(s) 328, 1133, 1189, 1310
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 167, 1381
Bse1I ACTGG 5 cut(s) 599, 968, 1034, 1169, 1375
Bse3DI GCAATG 2 cut(s) 111, 1035
Bse8I GATNNNNATC 2 cut(s) 291, 384
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 581, 1311
BseDI CCNNGG 4 cut(s) 328, 1133, 1189, 1310
BseGI GGATG 9 cut(s) 157, 190, 307, 613, 844, 1025, 1120, 1291, 1320
BseJI GATNNNNATC 2 cut(s) 291, 384
BseLI CCNNNNNNNGG 3 cut(s) 99, 167, 1381
BseMI GCAATG 2 cut(s) 111, 1035
BseMII CTCAG 2 cut(s) 231, 874
BseNI ACTGG 5 cut(s) 599, 968, 1034, 1169, 1375
BseXI GCAGC 2 cut(s) 58, 709
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 1398
BsiHKCI CYCGRG 2 cut(s) 935, 1134
BsiSI CCGG 2 cut(s) 161, 176
BslFI GGGAC 2 cut(s) 1095, 1216
BslI CCNNNNNNNGG 3 cut(s) 99, 167, 1381
BsmAI GTCTC 3 cut(s) 249, 399, 533
BsmFI GGGAC 2 cut(s) 1095, 1216
BsoBI CYCGRG 2 cut(s) 935, 1134
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 4, 292, 346, 1185
Bsp19I CCATGG 1 cut(s) 1189
BspACI CCGC 2 cut(s) 725, 1110
BspCNI CTCAG 2 cut(s) 232, 873
BspEI TCCGGA 1 cut(s) 160
BspHI TCATGA 1 cut(s) 885
BspLI GGNNCC 1 cut(s) 1393
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 2 cut(s) 12, 1180
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 111, 1035
BsrI ACTGG 5 cut(s) 599, 968, 1034, 1169, 1375
BssECI CCNNGG 4 cut(s) 328, 1133, 1189, 1310
BssMI GATC 4 cut(s) 4, 292, 346, 1185
BssT1I CCWWGG 1 cut(s) 1189
Bst2UI CCWGG 2 cut(s) 581, 1311
Bst4CI ACNGT 4 cut(s) 48, 329, 659, 1419
Bst6I CTCTTC 2 cut(s) 90, 159
BstAFI CTTAAG 1 cut(s) 491
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstBAI YACGTR 1 cut(s) 761
BstC8I GCNNGC 6 cut(s) 173, 237, 412, 561, 628, 1026
BstDEI CTNAG 3 cut(s) 240, 860, 1043
BstDSI CCRYGG 2 cut(s) 328, 1189
BstF5I GGATG 9 cut(s) 157, 190, 307, 613, 844, 1025, 1120, 1291, 1320
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 565
BstKTI GATC 4 cut(s) 7, 295, 349, 1188
BstMAI GTCTC 3 cut(s) 249, 399, 533
BstMBI GATC 4 cut(s) 4, 292, 346, 1185
BstMWI GCNNNNNNNGC 3 cut(s) 236, 560, 1030
BstNI CCWGG 2 cut(s) 581, 1311
BstNSI RCATGY 1 cut(s) 875
BstPAI GACNNNNGTC 1 cut(s) 1146
BstSCI CCNGG 2 cut(s) 579, 1309
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 58, 709
BstV2I GAAGAC 2 cut(s) 735, 1420
BstX2I RGATCY 1 cut(s) 1185
BstYI RGATCY 1 cut(s) 1185
BtgI CCRYGG 2 cut(s) 328, 1189
BtsCI GGATG 9 cut(s) 157, 190, 307, 613, 844, 1025, 1120, 1291, 1320
BtsIMutI CAGTG 2 cut(s) 975, 1424
Cac8I GCNNGC 6 cut(s) 173, 237, 412, 561, 628, 1026
CciI TCATGA 1 cut(s) 885
CfoI GCGC 2 cut(s) 105, 565
Cfr13I GGNCC 1 cut(s) 1289
Csp6I GTAC 1 cut(s) 1005
CviAII CATG 5 cut(s) 205, 872, 886, 1094, 1190
CviQI GTAC 1 cut(s) 1005
DdeI CTNAG 3 cut(s) 240, 860, 1043
DpnI GATC 4 cut(s) 6, 294, 348, 1187
DpnII GATC 4 cut(s) 4, 292, 346, 1185
DriI GACNNNNNGTC 1 cut(s) 1164
Eam1104I CTCTTC 2 cut(s) 90, 159
Eam1105I GACNNNNNGTC 1 cut(s) 1164
EarI CTCTTC 2 cut(s) 90, 159
Eco130I CCWWGG 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 1029
Eco88I CYCGRG 2 cut(s) 935, 1134
EcoRII CCWGG 2 cut(s) 579, 1309
EcoT14I CCWWGG 1 cut(s) 1189
ErhI CCWWGG 1 cut(s) 1189
FaeI CATG 5 cut(s) 208, 875, 889, 1097, 1193
FaqI GGGAC 2 cut(s) 1095, 1216
FatI CATG 5 cut(s) 204, 871, 885, 1093, 1189
FauI CCCGC 1 cut(s) 1103
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 72, 723
FokI GGATG 9 cut(s) 144, 197, 314, 620, 851, 1032, 1127, 1298, 1327
Fsp4HI GCNGC 2 cut(s) 72, 723
FspBI CTAG 3 cut(s) 422, 690, 1251
GlaI GCGC 2 cut(s) 104, 564
GluI GCNGC 2 cut(s) 72, 723
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 935
HaeII RGCGCY 1 cut(s) 106
HapII CCGG 2 cut(s) 161, 176
HhaI GCGC 2 cut(s) 105, 565
Hin1II CATG 5 cut(s) 208, 875, 889, 1097, 1193
Hin6I GCGC 2 cut(s) 103, 563
HinP1I GCGC 2 cut(s) 103, 563
HpaII CCGG 2 cut(s) 161, 176
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 3 cut(s) 20, 592, 1055
Hpy188I TCNGA 7 cut(s) 292, 340, 607, 655, 715, 863, 1464
Hpy188III TCNNGA 7 cut(s) 161, 506, 634, 886, 914, 935, 1136
Hpy8I GTNNAC 3 cut(s) 20, 592, 1055
Hpy99I CGWCG 2 cut(s) 659, 1355
HpyAV CCTTC 2 cut(s) 1004, 1252
HpyCH4III ACNGT 4 cut(s) 48, 329, 659, 1419
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 5 cut(s) 235, 626, 1090, 1219, 1415
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 560, 1030
HpyF3I CTNAG 3 cut(s) 240, 860, 1043
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 5 cut(s) 208, 875, 889, 1097, 1193
HspAI GCGC 2 cut(s) 103, 563
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 4, 292, 346, 1185
LmnI GCTCC 2 cut(s) 471, 1312
Lsp1109I GCAGC 2 cut(s) 58, 709
LweI GCATC 3 cut(s) 829, 1105, 1206
MaeI CTAG 3 cut(s) 422, 690, 1251
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 5 cut(s) 610, 707, 784, 1096, 1121
MalI GATC 4 cut(s) 6, 294, 348, 1187
MboI GATC 4 cut(s) 4, 292, 346, 1185
MboII GAAGA 9 cut(s) 77, 146, 176, 389, 740, 766, 1031, 1420, 1448
MflI RGATCY 1 cut(s) 1185
MluCI AATT 8 cut(s) 189, 257, 276, 447, 572, 819, 1048, 1326
MlyI GAGTC 7 cut(s) 251, 490, 503, 535, 968, 1077, 1459
MmeI TCCRAC 2 cut(s) 287, 678
MroI TCCGGA 1 cut(s) 160
MseI TTAA 7 cut(s) 252, 353, 426, 492, 744, 822, 999
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 2 cut(s) 161, 176
MspR9I CCNGG 2 cut(s) 581, 1311
MvaI CCWGG 2 cut(s) 581, 1311
MwoI GCNNNNNNNGC 3 cut(s) 236, 560, 1030
NcoI CCATGG 1 cut(s) 1189
NdeII GATC 4 cut(s) 4, 292, 346, 1185
NlaIII CATG 5 cut(s) 208, 875, 889, 1097, 1193
NlaIV GGNNCC 1 cut(s) 1393
NmuCI GTSAC 3 cut(s) 610, 1096, 1121
NspI RCATGY 1 cut(s) 875
PaeR7I CTCGAG 1 cut(s) 935
PagI TCATGA 1 cut(s) 885
PciI ACATGT 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 766
PfeI GAWTC 4 cut(s) 287, 602, 650, 771
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 2 cut(s) 99, 1381
PkrI GCNGC 2 cut(s) 73, 724
PleI GAGTC 7 cut(s) 250, 490, 503, 535, 967, 1077, 1459
PpsI GAGTC 7 cut(s) 250, 490, 503, 535, 967, 1077, 1459
Ppu21I YACGTR 1 cut(s) 761
PscI ACATGT 1 cut(s) 871
PshAI GACNNNNGTC 1 cut(s) 1146
PshBI ATTAAT 2 cut(s) 353, 822
Psp6I CCWGG 2 cut(s) 579, 1309
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 2 cut(s) 579, 1309
PspN4I GGNNCC 1 cut(s) 1393
PspPI GGNCC 1 cut(s) 1289
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 1185
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 1006
RsaNI GTAC 1 cut(s) 1005
SaqAI TTAA 7 cut(s) 252, 353, 426, 492, 744, 822, 999
SatI GCNGC 2 cut(s) 72, 723
Sau3AI GATC 4 cut(s) 4, 292, 346, 1185
Sau96I GGNCC 1 cut(s) 1289
ScaI AGTACT 1 cut(s) 1006
SchI GAGTC 7 cut(s) 251, 490, 503, 535, 968, 1077, 1459
ScrFI CCNGG 2 cut(s) 581, 1311
SfaNI GCATC 3 cut(s) 829, 1105, 1206
SfcI CTRYAG 1 cut(s) 233
Sfr274I CTCGAG 1 cut(s) 935
SinI GGWCC 1 cut(s) 1289
SlaI CTCGAG 1 cut(s) 935
SmlI CTYRAG 5 cut(s) 266, 491, 566, 632, 935
SmoI CTYRAG 5 cut(s) 266, 491, 566, 632, 935
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 8 cut(s) 189, 257, 276, 447, 572, 819, 1048, 1326
SsiI CCGC 2 cut(s) 725, 1110
SspMI CTAG 3 cut(s) 422, 690, 1251
StyD4I CCNGG 2 cut(s) 579, 1309
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 4 cut(s) 48, 329, 659, 1419
TaiI ACGT 1 cut(s) 763
TaqI TCGA 5 cut(s) 769, 936, 1015, 1198, 1302
TasI AATT 8 cut(s) 189, 257, 276, 447, 572, 819, 1048, 1326
TatI WGTACW 1 cut(s) 1004
TfiI GAWTC 4 cut(s) 287, 602, 650, 771
Tru1I TTAA 7 cut(s) 252, 353, 426, 492, 744, 822, 999
Tru9I TTAA 7 cut(s) 252, 353, 426, 492, 744, 822, 999
TscAI CASTG 2 cut(s) 975, 1424
TseFI GTSAC 3 cut(s) 610, 1096, 1121
TseI GCWGC 2 cut(s) 71, 722
Tsp45I GTSAC 3 cut(s) 610, 1096, 1121
TspDTI ATGAA 6 cut(s) 146, 193, 201, 666, 810, 902
TspRI CASTG 2 cut(s) 975, 1424
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 2 cut(s) 99, 1381
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 1289
VspI ATTAAT 2 cut(s) 353, 822
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 875
XhoI CTCGAG 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 3 cut(s) 422, 690, 1251
ZrmI AGTACT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.