AT3G03040

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Forward (+)
684389 .. 686639
2251 bp
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UTR
Exon/CDS
Intron
AT3G03040.1

Sequence Viewer

Length: 1419 bp
ATGGATCTGTTGAGCAGTTTACCAGACGAGGTTCGTTGTCTTATATTGTCCTTTCTTACCACAAAGGAGTCTGCTTCCACATCTGTTCTGTCTAAGAAGTGGCGTAATCTGTTTGCACTTGTCCCTAATCTTGACTTTGATGACTCTGAGTTTCTTCATCCGGAAGAGGGTAAGCGGGAAAGAGACGGTATTCTTCAGAGTTTCATGGATTTTGTGGATAGAGTATTGTCTCTTCAGGGCAATTCTTCCATTCGTAAGTTCTCTCTCAAGTGTGAAACTGGTGTTCCTCCAGCTCGTGTGAATCGTTGGTTGTGTGAGGTGCTGCAGCGTGATGTTTCAGACATTGATCTCACCATTGATTTGGGATATGGTTATTATCTGCCTGAAGAGTTGTTCGTGAGTGAGACACTAGTCAATCTGAAATTAAAAAGTGCATTTAATATTGATTGGTGGCCTGGAGCTGAAGGCACTTCCTTACCAATGCTTAAAAGTCTTTGTGTTTACGGTGTGAGGGTTTTTTGTGATGATGAGCTTCAGGAGCTTCTTCCTTGTTTCCCTGTGCTTGAAGAATTACAAATGTCTAATATGCAGTGGCTTGATTCTGATGAAACCGTGTCAAGTGCAACCCTCACAACGCTCCATATTACTGGCATCCGCTCTGAAAATCCTAAGAGCATTTCTTTTGATACTCCAAATCTGCTTTCCTTTGTCTACACTGATTTTGTTGCGGAGGACTATCCATTAGTTAATATGAAAAACTTGTCTCTGGCTCGACTCGCCCTTAGAGCAAATGACGATCAAATCAAGCGAGTAAGAGGGCCAAGTAATGATTTGTTAGAGTATGATGTCGTTCGCCACTTTGGCAATGTGGTGAAGCTCATGAATGGCATACAAAATGTTCAGGAACTTCACTTGTGTCCTGATACTCTCGAGTTGCTTTCTGTATGCTGTGAGTCGATGCCAGTGTTCAACAACGTTAAAAAGTTACTTATTTACAGTGACGAGGATCGAGGATGGCAAGCAGTGCCAGTTCTTCTACGGAATTGTCCACGTTTAGAAACTCTAATATTTGAGGGTATCGTGCACCATGTGACAGATAAATGCGGGGATGCTTGTGACTGCATTTTCCGAAAGGACAAAGGCCGTTCGCTCAAATCTTGTCCAGTGAAAGTGGTAGAGATTAATGGGTTTGGAGTAACAATGAAAGAGAAGTACCTGATAGAGCATTTCTTGGATTACTTTTCGTGTTTAAAGGAGATGAAGATCTATATTAATTGTGAAGAGGATGGTGTTACACAACAGGTTATGAAGAACCGTGAAGTGTCTAAACTTGTCTTGGATGAGATGGAAGAGTACAACGAGTTCTATAGTTGCAATGTGAAGCTATTCTTGTGTAAGAAGAAGTCGATTCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

472

Amino Acids

54.06

Weight (kDa)

4.95

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 1.2e-07 F-box domain
LRR_At5g56370 PF24758 100 - 238 3.6e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 657
AccI GTMKAC 1 cut(s) 711
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 4 cut(s) 175, 655, 728, 1104
AclI AACGTT 1 cut(s) 975
AclWI GGATC 2 cut(s) 12, 1014
AcuI CTGAAG 5 cut(s) 179, 218, 405, 483, 518
AdeI CACNNNGTG 1 cut(s) 1090
AfaI GTAC 2 cut(s) 1214, 1355
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 2 cut(s) 566, 970
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AluBI AGCT 6 cut(s) 293, 461, 532, 541, 877, 1384
AluI AGCT 6 cut(s) 293, 461, 532, 541, 877, 1384
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 4 cut(s) 177, 234, 398, 768
Alw44I GTGCAC 1 cut(s) 1082
AlwI GGATC 2 cut(s) 12, 1014
Ama87I CYCGRG 1 cut(s) 929
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 452, 818, 1141
ApaLI GTGCAC 1 cut(s) 1082
ApeKI GCWGC 2 cut(s) 322, 325
AseI ATTAAT 2 cut(s) 1182, 1272
Asp700I GAANNNNTTC 1 cut(s) 1385
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 2 cut(s) 343, 883
AvaI CYCGRG 1 cut(s) 929
BaeGI GKGCMC 1 cut(s) 1086
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 1086
BbvI GCAGC 2 cut(s) 309, 337
BccI CCATC 3 cut(s) 1008, 1280, 1339
BceAI ACGGC 1 cut(s) 1128
BciT130I CCWGG 1 cut(s) 456
BcoDI GTCTC 4 cut(s) 177, 234, 398, 768
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 323, 1366
BglI GCCNNNNNGGC 1 cut(s) 861
BglII AGATCT 1 cut(s) 1263
BisI GCNGC 2 cut(s) 323, 326
BlsI GCNGC 2 cut(s) 324, 327
Bme1390I CCNGG 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 818
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 660, 948, 1099
BoxI GACNNNNGTC 1 cut(s) 410
BpmI CTGGAG 2 cut(s) 273, 477
BpuEI CTTGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 1262
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 5 cut(s) 283, 652, 962, 1028, 1163
Bse3DI GCAATG 2 cut(s) 871, 1381
Bse8I GATNNNNATC 1 cut(s) 1262
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 456
BseGI GGATG 6 cut(s) 157, 651, 1019, 1114, 1291, 1345
BseJI GATNNNNATC 1 cut(s) 1262
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 2 cut(s) 871, 1381
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 5 cut(s) 283, 652, 962, 1028, 1163
BseSI GKGCMC 1 cut(s) 1086
BseXI GCAGC 2 cut(s) 309, 337
BshFI GGCC 3 cut(s) 454, 820, 1143
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 4 cut(s) 177, 234, 398, 768
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 3 cut(s) 454, 820, 1143
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 4, 346, 796, 1006, 1263
BspACI CCGC 4 cut(s) 175, 655, 728, 1104
BspANI GGCC 3 cut(s) 454, 820, 1143
BspCNI CTCAG 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 160
BspHI TCATGA 1 cut(s) 879
BspMAI CTGCAG 1 cut(s) 327
BspPI GGATC 2 cut(s) 12, 1014
BsrBI CCGCTC 1 cut(s) 657
BsrDI GCAATG 2 cut(s) 871, 1381
BsrI ACTGG 5 cut(s) 283, 652, 962, 1028, 1163
BssMI GATC 5 cut(s) 4, 346, 796, 1006, 1263
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 5 cut(s) 188, 506, 613, 998, 1316
Bst6I CTCTTC 5 cut(s) 159, 237, 381, 1275, 1344
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 93, 147, 669, 782
BstF5I GGATG 6 cut(s) 157, 651, 1019, 1114, 1291, 1345
BstKTI GATC 5 cut(s) 7, 349, 799, 1009, 1266
BstMAI GTCTC 4 cut(s) 177, 234, 398, 768
BstMBI GATC 5 cut(s) 4, 346, 796, 1006, 1263
BstMWI GCNNNNNNNGC 5 cut(s) 538, 776, 785, 861, 1024
BstNI CCWGG 1 cut(s) 456
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 2 cut(s) 323, 1366
BstSLI GKGCMC 1 cut(s) 1086
BstV1I GCAGC 2 cut(s) 309, 337
BstX2I RGATCY 2 cut(s) 4, 1263
BstXI CCANNNNNNTGG 2 cut(s) 361, 647
BstYI RGATCY 2 cut(s) 4, 1263
BsuRI GGCC 3 cut(s) 454, 820, 1143
BtsCI GGATG 6 cut(s) 157, 651, 1019, 1114, 1291, 1345
BtsI GCAGTG 2 cut(s) 596, 1029
BtsIMutI CAGTG 6 cut(s) 596, 714, 969, 1003, 1029, 1170
Cac8I GCNNGC 1 cut(s) 1020
CciI TCATGA 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 818
Csp6I GTAC 2 cut(s) 1213, 1354
CviAII CATG 3 cut(s) 205, 880, 1088
CviQI GTAC 2 cut(s) 1213, 1354
DdeI CTNAG 4 cut(s) 93, 147, 669, 782
DpnI GATC 5 cut(s) 6, 348, 798, 1008, 1265
DpnII GATC 5 cut(s) 4, 346, 796, 1006, 1263
DraI TTTAAA 1 cut(s) 1251
DraIII CACNNNGTG 1 cut(s) 1090
Eam1104I CTCTTC 5 cut(s) 159, 237, 381, 1275, 1344
EarI CTCTTC 5 cut(s) 159, 237, 381, 1275, 1344
Eco57I CTGAAG 5 cut(s) 179, 218, 405, 483, 518
Eco88I CYCGRG 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 208, 883, 1091
FalI AAGNNNNNCTT 2 cut(s) 1373, 1405
FaqI GGGAC 1 cut(s) 107
FatI CATG 3 cut(s) 204, 879, 1087
FauI CCCGC 2 cut(s) 168, 1097
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 2 cut(s) 323, 326
FokI GGATG 6 cut(s) 144, 638, 1026, 1121, 1298, 1352
Fsp4HI GCNGC 2 cut(s) 323, 326
FspBI CTAG 1 cut(s) 410
GluI GCNGC 2 cut(s) 323, 326
GsuI CTGGAG 2 cut(s) 273, 477
HaeIII GGCC 3 cut(s) 454, 820, 1143
HapII CCGG 1 cut(s) 161
Hin1II CATG 3 cut(s) 208, 883, 1091
HinfI GANTC 7 cut(s) 68, 143, 301, 599, 774, 953, 1408
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 343, 883
Hpy166II GTNNAC 5 cut(s) 20, 502, 712, 1049, 1084
Hpy188I TCNGA 7 cut(s) 148, 198, 340, 420, 604, 661, 1130
Hpy188III TCNNGA 8 cut(s) 131, 161, 397, 536, 880, 902, 920, 929
Hpy8I GTNNAC 5 cut(s) 20, 502, 712, 1049, 1084
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 5 cut(s) 188, 506, 613, 998, 1316
HpyCH4IV ACGT 2 cut(s) 975, 1051
HpyCH4V TGCA 8 cut(s) 116, 325, 434, 589, 623, 1084, 1122, 1374
HpyF10VI GCNNNNNNNGC 5 cut(s) 538, 776, 785, 861, 1024
HpyF3I CTNAG 4 cut(s) 93, 147, 669, 782
HpySE526I ACGT 2 cut(s) 975, 1051
Hsp92II CATG 3 cut(s) 208, 883, 1091
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 4, 346, 796, 1006, 1263
LmnI GCTCC 3 cut(s) 458, 538, 642
Lsp1109I GCAGC 2 cut(s) 309, 337
LweI GCATC 3 cut(s) 660, 948, 1099
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 975, 1051
MaeIII GTNAC 6 cut(s) 984, 998, 1090, 1115, 1195, 1291
MalI GATC 5 cut(s) 6, 348, 798, 1008, 1265
MbiI CCGCTC 1 cut(s) 657
MboI GATC 5 cut(s) 4, 346, 796, 1006, 1263
MflI RGATCY 2 cut(s) 4, 1263
MhlI GDGCHC 1 cut(s) 1086
MluCI AATT 5 cut(s) 241, 422, 569, 1042, 1273
MlyI GAGTC 4 cut(s) 77, 137, 768, 962
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 1385
MseI TTAA 8 cut(s) 425, 438, 486, 747, 978, 1182, 1250, 1272
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 538, 776, 785, 861, 1024
NdeII GATC 5 cut(s) 4, 346, 796, 1006, 1263
NlaIII CATG 3 cut(s) 208, 883, 1091
NmuCI GTSAC 3 cut(s) 998, 1090, 1115
PaeR7I CTCGAG 1 cut(s) 929
PagI TCATGA 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 1385
PfeI GAWTC 3 cut(s) 301, 599, 1408
PkrI GCNGC 2 cut(s) 324, 327
PleI GAGTC 4 cut(s) 76, 137, 768, 961
PpsI GAGTC 4 cut(s) 76, 137, 768, 961
PshAI GACNNNNGTC 1 cut(s) 410
PshBI ATTAAT 2 cut(s) 1182, 1272
Psp1406I AACGTT 1 cut(s) 975
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PspPI GGNCC 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 1346, 1378
PstI CTGCAG 1 cut(s) 327
PsuI RGATCY 2 cut(s) 4, 1263
RsaI GTAC 2 cut(s) 1214, 1355
RsaNI GTAC 2 cut(s) 1213, 1354
SaqAI TTAA 8 cut(s) 425, 438, 486, 747, 978, 1182, 1250, 1272
SatI GCNGC 2 cut(s) 323, 326
Sau3AI GATC 5 cut(s) 4, 346, 796, 1006, 1263
Sau96I GGNCC 1 cut(s) 818
SchI GAGTC 4 cut(s) 77, 137, 768, 962
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 1 cut(s) 1086
SfaNI GCATC 3 cut(s) 660, 948, 1099
SfcI CTRYAG 2 cut(s) 323, 1366
Sfr274I CTCGAG 1 cut(s) 929
SlaI CTCGAG 1 cut(s) 929
SmlI CTYRAG 2 cut(s) 266, 929
SmoI CTYRAG 2 cut(s) 266, 929
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 5 cut(s) 241, 422, 569, 1042, 1273
SsiI CCGC 4 cut(s) 175, 655, 728, 1104
SspI AATATT 2 cut(s) 442, 1068
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 5 cut(s) 188, 506, 613, 998, 1316
TaiI ACGT 2 cut(s) 978, 1054
TaqI TCGA 5 cut(s) 772, 930, 956, 1009, 1406
TasI AATT 5 cut(s) 241, 422, 569, 1042, 1273
TatI WGTACW 1 cut(s) 1353
TfiI GAWTC 3 cut(s) 301, 599, 1408
Tru1I TTAA 8 cut(s) 425, 438, 486, 747, 978, 1182, 1250, 1272
Tru9I TTAA 8 cut(s) 425, 438, 486, 747, 978, 1182, 1250, 1272
TscAI CASTG 6 cut(s) 596, 721, 969, 1003, 1029, 1170
TseFI GTSAC 3 cut(s) 998, 1090, 1115
TseI GCWGC 2 cut(s) 322, 325
Tsp45I GTSAC 3 cut(s) 998, 1090, 1115
TspDTI ATGAA 8 cut(s) 146, 193, 621, 767, 896, 1217, 1274, 1322
TspGWI ACGGA 1 cut(s) 1054
TspRI CASTG 6 cut(s) 596, 721, 969, 1003, 1029, 1170
VneI GTGCAC 1 cut(s) 1082
VspI ATTAAT 2 cut(s) 1182, 1272
XhoI CTCGAG 1 cut(s) 929
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 1385
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.