AT5G38396

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003780
Physical Location & Seq
Forward (+)
15373094 .. 15374726
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38396.1

Sequence Viewer

Length: 1389 bp
ATGGATCTCTTAAGAAATATACCAGACGAGCTTATTTGCCATATATTGTCCTTCCTTACAACAAAGGAGGCTGCTTTGACATCGGTTCTCTCCAAGAGGTGGCGCAATCTGCTTGCTTTTGTCTCTAATCTTCACATTGATGACTCTATCTTTCTGCATCCCGAAGAGGGTAAGCGTGACAGGAACGAAATTCGACAGAGCTTCCTAGATTTTGTGGGTAGAATATTGGCATTGCAAGGTAATTGTCCGGTTAAGAAAGTCTCCATCAAGTTTCTATTTAAGCTTGATTCAGACCGAGTTGATGGTTGGATAAGTAATGTGTTGGCACGTGGTGTTTCCGAACTTGATCTGTCAATCGATTTGTGTATGGATGAATACTTTCTGTTGTCTTCAAAACGTTTCGAGAGCAAGAATCTAGTTAGGTTGAAATTACACAGACTTTGTATTGGCCAACGGGAAAAAACTGTTGGTTGGTTGGCTGGGGAGATTTTCTTACCAATGCTTAAAACTCTCGAACTTGATTATGTTGGGTTTTATGGTGATTTGTTGTTTCTTAGAGCTTTACCTGCGCTAGAGGAATTAGTCATTGTTGATGCATTCTGGTTCACGACCTTTACGGATGTCACCGTGTCAAATCCAAGCCTCAAGACCCTAACAATGAGTTCCAATATTTATTCAGGCAGTATTTCATTTGATACACCTAGTCTTGTTTACTTTAGTCACTTTAAGTATGTTGCTAAAGACTACCCCTTAGTTAACATGGAAAACTTACTTGAGGCTAGGATCAACCTTGGGGTAACTGAGGGTCAAATCAGACGAGCAAGAGAGCCAAATAACAATGACGAGGTTGTTCTCCGGTTTCCAAATGTGGGGAAGCTCATGAATGGCATACGAAATGTTCAGTGTCTAGACTTGTCTGCCAATACTCTTGAGATGCTTTCTCTAAGCTGTGAATCAATGCCAGTGTTCAAAAACCTCAAATCTTTATCTATCAAGAGTGCCGAGAATCGAGGATGGCAAGCAATGCCAGTTCTTCTGAGGAACTGTCCACATCTAGAAACTCTAGTCCTTGAGGGTCTCTTGCACTTTGTCACAGATAAATGCGGGGATGCTTGTGACTGCGTTTCTCGAGAGGAAAAAGGTCGTTCGCTCACATCTTGTCCAGTAAAAACGTTAGAGATTAAAGAGTTTCATGGAACAATGGAAGAGATGTACATGATAACGCATTTCTTGGACTATTTTCCGTGTTTGAAGGAGCTAAAGATCTATATTGAAGGGAATGATCATGCACAGCGCGAAGTGTCTGAAGTTATCGCGGAGAAGATAAAACTCTACAACAAATCATCGAGTAGCAATGTCCAGCTTATGGTTAGTGGTTACCATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

462

Amino Acids

52.75

Weight (kDa)

5.95

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 38 2.4e-07 F-box domain
LRR_At5g56370 PF24758 100 - 241 8.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 574
AccB7I CCANNNNNTGG 2 cut(s) 99, 1366
AccII CGCG 2 cut(s) 1296, 1316
AciI CCGC 2 cut(s) 1104, 1316
AclI AACGTT 2 cut(s) 397, 1172
AclWI GGATC 2 cut(s) 12, 791
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 1326
AcvI CACGTG 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 1214
AfiI CCNNNNNNNGG 4 cut(s) 99, 167, 869, 1366
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 5 cut(s) 393, 427, 970, 1252, 1274
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 8 cut(s) 31, 201, 283, 560, 877, 948, 1258, 1363
AluI AGCT 8 cut(s) 31, 201, 283, 560, 877, 948, 1258, 1363
Alw26I GTCTC 3 cut(s) 127, 265, 1082
AlwI GGATC 2 cut(s) 12, 791
Ama87I CYCGRG 1 cut(s) 1128
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 3 cut(s) 105, 571, 1296
AsuHPI GGTGA 2 cut(s) 551, 616
AvaI CYCGRG 1 cut(s) 1128
BalI TGGCCA 1 cut(s) 450
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 272, 296, 1008
BclI TGATCA 1 cut(s) 1282
BcoDI GTCTC 3 cut(s) 127, 265, 1082
BfaI CTAG 8 cut(s) 206, 416, 572, 702, 780, 908, 1055, 1064
BfrI CTTAAG 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 1263
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 1128
BmsI GCATC 4 cut(s) 166, 583, 924, 1099
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 4 cut(s) 629, 794, 950, 1091
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 1082
BsaJI CCNNGG 1 cut(s) 790
BsaWI WCCGGW 2 cut(s) 247, 855
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 167, 869, 1366
Bse1I ACTGG 3 cut(s) 962, 1028, 1163
Bse3DI GCAATG 3 cut(s) 230, 1029, 1360
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 790
BseGI GGATG 5 cut(s) 157, 376, 625, 1019, 1114
BseLI CCNNNNNNNGG 4 cut(s) 99, 167, 869, 1366
BseMI GCAATG 3 cut(s) 230, 1029, 1360
BseMII CTCAG 2 cut(s) 792, 1028
BseNI ACTGG 3 cut(s) 962, 1028, 1163
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 1296, 1316
BshFI GGCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 1128
BsiSI CCGG 2 cut(s) 248, 856
BslI CCNNNNNNNGG 4 cut(s) 99, 167, 869, 1366
BsmAI GTCTC 3 cut(s) 127, 265, 1082
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 1082
BsoBI CYCGRG 1 cut(s) 1128
Bsp1407I TGTACA 1 cut(s) 1212
Bsp143I GATC 5 cut(s) 4, 346, 783, 1263, 1282
BspACI CCGC 2 cut(s) 1104, 1316
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 2 cut(s) 793, 1029
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 2 cut(s) 1296, 1316
BspHI TCATGA 1 cut(s) 879
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 2 cut(s) 12, 791
BspTI CTTAAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 1082
BsrDI GCAATG 3 cut(s) 230, 1029, 1360
BsrGI TGTACA 1 cut(s) 1212
BsrI ACTGG 3 cut(s) 962, 1028, 1163
BssECI CCNNGG 1 cut(s) 790
BssMI GATC 5 cut(s) 4, 346, 783, 1263, 1282
BssT1I CCWWGG 1 cut(s) 790
Bst4CI ACNGT 3 cut(s) 466, 628, 1046
Bst6I CTCTTC 2 cut(s) 159, 1200
BstAFI CTTAAG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstAUI TGTACA 1 cut(s) 1212
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 114, 1020
BstDEI CTNAG 5 cut(s) 554, 751, 801, 944, 1037
BstEII GGTNACC 1 cut(s) 1376
BstF5I GGATG 5 cut(s) 157, 376, 625, 1019, 1114
BstFNI CGCG 2 cut(s) 1296, 1316
BstHHI GCGC 3 cut(s) 105, 571, 1296
BstKTI GATC 5 cut(s) 7, 349, 786, 1266, 1285
BstMAI GTCTC 3 cut(s) 127, 265, 1082
BstMBI GATC 5 cut(s) 4, 346, 783, 1263, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 109, 566, 1024
BstPI GGTNACC 1 cut(s) 1376
BstUI CGCG 2 cut(s) 1296, 1316
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 4, 1263
BstYI RGATCY 2 cut(s) 4, 1263
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 5 cut(s) 157, 376, 625, 1019, 1114
BtsIMutI CAGTG 2 cut(s) 908, 969
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 114, 1020
CciI TCATGA 1 cut(s) 879
CfoI GCGC 3 cut(s) 105, 571, 1296
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 1 cut(s) 1213
CviAII CATG 6 cut(s) 760, 880, 1193, 1216, 1286, 1382
CviQI GTAC 1 cut(s) 1213
DdeI CTNAG 5 cut(s) 554, 751, 801, 944, 1037
DpnI GATC 5 cut(s) 6, 348, 785, 1265, 1284
DpnII GATC 5 cut(s) 4, 346, 783, 1263, 1282
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 159, 1200
EarI CTCTTC 2 cut(s) 159, 1200
Eco130I CCWWGG 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 1082
Eco57I CTGAAG 1 cut(s) 1326
Eco72I CACGTG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 1128
Eco91I GGTNACC 1 cut(s) 1376
EcoO65I GGTNACC 1 cut(s) 1376
EcoT14I CCWWGG 1 cut(s) 790
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 790
FaeI CATG 6 cut(s) 763, 883, 1196, 1219, 1289, 1385
FatI CATG 6 cut(s) 759, 879, 1192, 1215, 1285, 1381
FauI CCCGC 1 cut(s) 1097
FbaI TGATCA 1 cut(s) 1282
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 5 cut(s) 144, 383, 632, 1026, 1121
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 8 cut(s) 206, 416, 572, 702, 780, 908, 1055, 1064
GlaI GCGC 3 cut(s) 104, 570, 1295
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 483
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 248, 856
HhaI GCGC 3 cut(s) 105, 571, 1296
Hin1II CATG 6 cut(s) 763, 883, 1196, 1219, 1289, 1385
Hin6I GCGC 3 cut(s) 103, 569, 1294
HinP1I GCGC 3 cut(s) 103, 569, 1294
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 143, 287, 412, 953, 1006
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 2 cut(s) 248, 856
HphI GGTGA 2 cut(s) 551, 616
Hpy166II GTNNAC 4 cut(s) 606, 712, 757, 1049
Hpy188I TCNGA 5 cut(s) 292, 340, 815, 1038, 1306
Hpy8I GTNNAC 4 cut(s) 606, 712, 757, 1049
HpyAV CCTTC 3 cut(s) 61, 1246, 1268
HpyCH4III ACNGT 3 cut(s) 466, 628, 1046
HpyCH4IV ACGT 3 cut(s) 328, 397, 1172
HpyCH4V TGCA 5 cut(s) 157, 235, 596, 1084, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 566, 1024
HpyF3I CTNAG 5 cut(s) 554, 751, 801, 944, 1037
HpySE526I ACGT 3 cut(s) 328, 397, 1172
Hsp92II CATG 6 cut(s) 763, 883, 1196, 1219, 1289, 1385
HspAI GCGC 3 cut(s) 103, 569, 1294
Ksp22I TGATCA 1 cut(s) 1282
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 4, 346, 783, 1263, 1282
LmnI GCTCC 1 cut(s) 1255
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 4 cut(s) 166, 583, 924, 1099
MaeI CTAG 8 cut(s) 206, 416, 572, 702, 780, 908, 1055, 1064
MaeII ACGT 3 cut(s) 328, 397, 1172
MaeIII GTNAC 7 cut(s) 176, 622, 719, 796, 1090, 1115, 1376
MalI GATC 5 cut(s) 6, 348, 785, 1265, 1284
MboI GATC 5 cut(s) 4, 346, 783, 1263, 1282
MboII GAAGA 6 cut(s) 122, 176, 381, 1025, 1217, 1333
MflI RGATCY 2 cut(s) 4, 1263
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 4 cut(s) 189, 241, 428, 578
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 450
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 450
MseI TTAA 7 cut(s) 11, 252, 279, 504, 726, 756, 1182
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 450
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 248, 856
Mva1269I GAATGC 1 cut(s) 596
MvnI CGCG 2 cut(s) 1296, 1316
MwoI GCNNNNNNNGC 3 cut(s) 109, 566, 1024
NdeII GATC 5 cut(s) 4, 346, 783, 1263, 1282
NlaIII CATG 6 cut(s) 763, 883, 1196, 1219, 1289, 1385
NmeAIII GCCGAG 1 cut(s) 1027
NmuCI GTSAC 5 cut(s) 176, 622, 719, 1090, 1115
NsiI ATGCAT 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 1128
PagI TCATGA 1 cut(s) 879
PctI GAATGC 1 cut(s) 596
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 287, 412, 953, 1006
PflMI CCANNNNNTGG 2 cut(s) 99, 1366
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 137
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 329
Psp1406I AACGTT 2 cut(s) 397, 1172
PspCI CACGTG 1 cut(s) 329
PspEI GGTNACC 1 cut(s) 1376
PspFI CCCAGC 1 cut(s) 479
PsuI RGATCY 2 cut(s) 4, 1263
RsaI GTAC 1 cut(s) 1214
RsaNI GTAC 1 cut(s) 1213
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 7 cut(s) 11, 252, 279, 504, 726, 756, 1182
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 5 cut(s) 4, 346, 783, 1263, 1282
SchI GAGTC 1 cut(s) 137
SfaNI GCATC 4 cut(s) 166, 583, 924, 1099
Sfr274I CTCGAG 1 cut(s) 1128
SlaI CTCGAG 1 cut(s) 1128
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 6 cut(s) 10, 644, 773, 929, 1070, 1128
SmoI CTYRAG 6 cut(s) 10, 644, 773, 929, 1070, 1128
Sse9I AATT 4 cut(s) 189, 241, 428, 578
SsiI CCGC 2 cut(s) 1104, 1316
SspI AATATT 2 cut(s) 225, 670
SspMI CTAG 8 cut(s) 206, 416, 572, 702, 780, 908, 1055, 1064
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 3 cut(s) 466, 628, 1046
TaiI ACGT 3 cut(s) 331, 400, 1175
TaqI TCGA 7 cut(s) 193, 357, 402, 513, 1009, 1129, 1346
TaqII GACCGA 1 cut(s) 309
TasI AATT 4 cut(s) 189, 241, 428, 578
TatI WGTACW 1 cut(s) 1212
TfiI GAWTC 4 cut(s) 287, 412, 953, 1006
Tru1I TTAA 7 cut(s) 11, 252, 279, 504, 726, 756, 1182
Tru9I TTAA 7 cut(s) 11, 252, 279, 504, 726, 756, 1182
TscAI CASTG 2 cut(s) 908, 969
TseFI GTSAC 5 cut(s) 176, 622, 719, 1090, 1115
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 5 cut(s) 176, 622, 719, 1090, 1115
TspDTI ATGAA 4 cut(s) 387, 678, 896, 1181
TspGWI ACGGA 2 cut(s) 632, 1233
TspRI CASTG 2 cut(s) 908, 969
Van91I CCANNNNNTGG 2 cut(s) 99, 1366
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 1 cut(s) 189
XbaI TCTAGA 2 cut(s) 907, 1054
XhoI CTCGAG 1 cut(s) 1128
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 8 cut(s) 206, 416, 572, 702, 780, 908, 1055, 1064
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.