AT3G58910

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Reverse (-)
21775306 .. 21776079
774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58910.1

Sequence Viewer

Length: 645 bp
ATGGATCGTGTTAGCAGTCTACCAGATGAGCTTCTTTGTCATATACTGTCCTTCCTTACCACAAAGGAGACTGCTTTGACTTCTCTTCTCTCCAAGAGGGAAATTATCCCGTTAATAAAGTCCGTGGTGTTTCCGACCTTGATCTATGCATCGTTTTTGGTCCAATTGGTTTCCAAACTAGTTAAGCTGAAGATAGGAAGTGGAATTGATCTTTGTTGGTGGACTGAGAGCATTTTCTTACCGATGCTGAAAACTCTTGTTCTTGATTCAGTTGAATTTTGTGTTGCTAGGTTTGAGATACTCTTTCCTGCTTGTCCTGCGCTTGAGGAATTAGAGATGGCTAATATAAAGGTATTAGATTCGGATGCGACCGTGTCAAGTGCAAGCCTCAAGACCCTAAAAATAGATTCCAGTGTTGGTTCAGGCTCTTTCTCATTTGATACACCAAATCTTGTGTACTTAGGTTACTCTGATTTTGTTGCAGAAGACTATCCCTTAGCTAATTTTCAAAATCTTTTTGAGGCTCGAATCAACCTTGTAGTAACTAAGGATCAAATCGAACGAGCAAGAGCCCCAAATAATGGTTGGTTAGAAGATGATGAGGATGATATTGCTCTTCGACTTGGCATACGAAAAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

214

Amino Acids

23.84

Weight (kDa)

4.68

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 57 - 154 2.1e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 19
AclWI GGATC 2 cut(s) 12, 558
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 275, 509
AhlI ACTAGT 1 cut(s) 178
AluBI AGCT 3 cut(s) 31, 187, 500
AluI AGCT 3 cut(s) 31, 187, 500
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 12, 558
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 637
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 160
AvaII GGWCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 492
BccI CCATC 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 2 cut(s) 179, 288
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmsI GCATC 3 cut(s) 158, 234, 355
BpiI GAAGAC 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 496
BpuEI CTTGAG 2 cut(s) 344, 374
BsaJI CCNNGG 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 370, 610
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 4 cut(s) 4, 141, 208, 550
BspCNI CTCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 12, 558
BspQI GCTCTTC 1 cut(s) 621
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 4, 141, 208, 550
Bst4CI ACNGT 2 cut(s) 48, 373
Bst6I CTCTTC 2 cut(s) 90, 621
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 225, 460, 496, 546
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 370, 610
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 7, 144, 211, 553
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 4 cut(s) 4, 141, 208, 550
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 370, 610
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 385
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 457
CviJI RGCY 8 cut(s) 31, 187, 341, 387, 426, 500, 524, 572
CviKI_1 RGCY 8 cut(s) 31, 187, 341, 387, 426, 500, 524, 572
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 4 cut(s) 225, 460, 496, 546
DpnI GATC 4 cut(s) 6, 143, 210, 552
DpnII GATC 4 cut(s) 4, 141, 208, 550
Eam1104I CTCTTC 2 cut(s) 90, 621
EarI CTCTTC 2 cut(s) 90, 621
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 574
FaiI YATR 6 cut(s) 42, 44, 147, 347, 629, 643
FblI GTMKAC 1 cut(s) 19
FokI GGATG 2 cut(s) 377, 617
FriOI GRGCYC 1 cut(s) 574
FspBI CTAG 2 cut(s) 179, 288
GlaI GCGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 322
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 4 cut(s) 266, 359, 407, 528
Hpy166II GTNNAC 3 cut(s) 20, 222, 457
Hpy188I TCNGA 3 cut(s) 135, 364, 472
Hpy188III TCNNGA 2 cut(s) 263, 391
Hpy8I GTNNAC 3 cut(s) 20, 222, 457
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 48, 373
HpyCH4V TGCA 3 cut(s) 149, 383, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 4 cut(s) 225, 460, 496, 546
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 4 cut(s) 4, 141, 208, 550
LguI GCTCTTC 1 cut(s) 621
LpnPI CCDG 5 cut(s) 36, 321, 330, 408, 424
LweI GCATC 3 cut(s) 158, 234, 355
MaeI CTAG 2 cut(s) 179, 288
MaeIII GTNAC 2 cut(s) 464, 541
MalI GATC 4 cut(s) 6, 143, 210, 552
MboI GATC 4 cut(s) 4, 141, 208, 550
MboII GAAGA 5 cut(s) 77, 202, 497, 605, 608
MfeI CAATTG 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 6 cut(s) 102, 164, 204, 275, 329, 502
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 5 cut(s) 90, 319, 398, 514, 595
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 2 cut(s) 113, 183
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 4 cut(s) 4, 141, 208, 550
NsiI ATGCAT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 4 cut(s) 266, 359, 407, 528
PflFI GACNNNGTC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 581
PspPI GGNCC 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 373
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 113, 183
Sau3AI GATC 4 cut(s) 4, 141, 208, 550
Sau96I GGNCC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 574
SetI ASST 8 cut(s) 33, 140, 189, 293, 354, 466, 502, 537
SfaNI GCATC 3 cut(s) 158, 234, 355
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 2 cut(s) 323, 389
SmoI CTYRAG 2 cut(s) 323, 389
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 6 cut(s) 102, 164, 204, 275, 329, 502
SspMI CTAG 2 cut(s) 179, 288
TaaI ACNGT 2 cut(s) 48, 373
TaqI TCGA 3 cut(s) 526, 558, 619
TasI AATT 6 cut(s) 102, 164, 204, 275, 329, 502
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 4 cut(s) 266, 359, 407, 528
Tru1I TTAA 2 cut(s) 113, 183
Tru9I TTAA 2 cut(s) 113, 183
TscAI CASTG 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 418
Tth111I GACNNNGTC 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 2 cut(s) 179, 288
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.