AT5G38391

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003780
Physical Location & Seq
Forward (+)
15368254 .. 15368851
598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38391.1

Sequence Viewer

Length: 537 bp
ATGGGTAAAGGGGATAGGGAAGATATTCGAGAGCTCTTCATGGATTTTGTTGATAGAGTATTGGCATTGCAGGGTGATTCTCCCATTAAGAAAGTCTCCATCAACTGTGTCGGTGTTGATTCAGTTAGAGTGGATGCTTGGATACGTAATGTGATGTTACGTGGTGTTTCAGAGCTTGTTCTTTTAATCGTTTTGGATGTCCAGTCGATTGGTAAGAAGTTTTGGGTGCCTCCAAAATGTTTCGAGAGCAAGAAACTAGTTAAGCTAGAGATAGGTTATGGAGTTGATATTGGTTGGTTAGATGGAAGCTTTTTCTTACTGATGCTTAAAACTCTTGTTCTTAGGTTAGTTCAGTTATCTGCTGATAAGTTTAAGATTCTTCTTCATGATTTGCCTGCGCTTGAGGAATTAGCCATGGGTTATGTAACCTGGAGTGAAGATGATGCTGTTGTGTCAGATGCAAACACTTTTTCGGTTGATACGCCGAGTCTCACTTACTTCTCTTACTCTGACTTGTTGCTAAAGACTACCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

178

Amino Acids

20.02

Weight (kDa)

4.92

Isoelectric Point (pI)

19.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 44 - 140 7.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AhlI ACTAGT 1 cut(s) 256
AjnI CCWGG 1 cut(s) 428
AluBI AGCT 4 cut(s) 34, 175, 265, 309
AluI AGCT 4 cut(s) 34, 175, 265, 309
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 100, 494
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BccI CCATC 2 cut(s) 107, 296
BciT130I CCWGG 1 cut(s) 430
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 100, 494
BcuI ACTAGT 1 cut(s) 256
BfaI CTAG 2 cut(s) 257, 266
BfuI GTATCC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 4 cut(s) 124, 312, 433, 448
BpmI CTGGAG 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 422
BsaAI YACGTR 2 cut(s) 146, 161
BsaJI CCNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 139, 202
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 100, 494
Bsp1286I GDGCHC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 228
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 41
BstBAI YACGTR 2 cut(s) 146, 161
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 139, 202
BstHHI GCGC 1 cut(s) 400
BstMAI GTCTC 2 cut(s) 100, 494
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSNI TACGTA 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 209
BsuI GTATCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 139, 202
Cac8I GCNNGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 400
CviAII CATG 3 cut(s) 40, 386, 415
CviJI RGCY 5 cut(s) 34, 175, 265, 309, 413
CviKI_1 RGCY 5 cut(s) 34, 175, 265, 309, 413
DdeI CTNAG 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 3 cut(s) 43, 389, 418
FaiI YATR 5 cut(s) 41, 279, 387, 416, 423
FatI CATG 3 cut(s) 39, 385, 414
FokI GGATG 2 cut(s) 146, 209
FriOI GRGCYC 1 cut(s) 36
FspBI CTAG 2 cut(s) 257, 266
GlaI GCGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 451
HhaI GCGC 1 cut(s) 400
Hin1II CATG 3 cut(s) 43, 389, 418
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 4 cut(s) 77, 119, 376, 487
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 172, 457, 511
Hpy188III TCNNGA 3 cut(s) 29, 244, 386
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 2 cut(s) 145, 160
HpyCH4V TGCA 2 cut(s) 70, 461
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 2 cut(s) 145, 160
Hsp92II CATG 3 cut(s) 43, 389, 418
HspAI GCGC 1 cut(s) 398
LguI GCTCTTC 1 cut(s) 41
LpnPI CCDG 5 cut(s) 56, 215, 408, 415, 442
LweI GCATC 4 cut(s) 124, 312, 433, 448
MaeI CTAG 2 cut(s) 257, 266
MaeII ACGT 2 cut(s) 145, 160
MaeIII GTNAC 2 cut(s) 156, 424
MboII GAAGA 5 cut(s) 28, 32, 371, 374, 449
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 407
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 2 cut(s) 240, 397
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 5 cut(s) 87, 185, 261, 327, 372
MspR9I CCNGG 1 cut(s) 430
MvaI CCWGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 414
NlaIII CATG 3 cut(s) 43, 389, 418
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 510
PagI TCATGA 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 77, 119, 376
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Ppu21I YACGTR 2 cut(s) 146, 161
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 228
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 5 cut(s) 87, 185, 261, 327, 372
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 430
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 36, 148, 163, 177, 267, 277, 311, 347, 431
SfaNI GCATC 4 cut(s) 124, 312, 433, 448
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SnaBI TACGTA 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 256
Sse9I AATT 1 cut(s) 407
SspMI CTAG 2 cut(s) 257, 266
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 428
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 2 cut(s) 148, 163
TaqI TCGA 3 cut(s) 28, 206, 243
TasI AATT 1 cut(s) 407
TfiI GAWTC 3 cut(s) 77, 119, 376
Tru1I TTAA 5 cut(s) 87, 185, 261, 327, 372
Tru9I TTAA 5 cut(s) 87, 185, 261, 327, 372
TspDTI ATGAA 2 cut(s) 28, 374
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 257, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.