AT3G58860

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Reverse (-)
21763720 .. 21765306
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58860.1

Sequence Viewer

Length: 1374 bp
ATGGACTCGGAGAAGATGGATCTCTTCAGCAAGTTACCGGACGAGGTTATTTCTCATATCTTGTCATCCCTTCCAACCAAAGAGGCTGCTTCAACATCGGTTCTCGCAAAGAAGTGGCGTTATCTGTTTGCGTTTGTCCCAAGTCTCGATTTCAATGACTCTGATTTTCTTCATCCCCAAGAGGGTAAACGGGAAAAGGACGGAATTCTTCGGAGTTTCATGGATTTCGTGGATAGGGTTTTGGCATTGCAGGGCGCTTCTCCCATTAAGAAATTCTCCCTAAATGTTAAAACTGGTGTTGATCCTGACCGTGTGGATCGTTGGATATGTAATGTGTTGCAACGCGGTGTTTCTCACCTTGCTCTATTCATGGATTTCGAAGAAGAATATTCGCTGCCTTACGAGATATCTGTGAGTAAGACATTAGTTGAGCTAAAAACAGGATATGGAGTTGATCTTTATTTGTGGGACGATGACATGTTCTTACCGATGCTTAAGACTCTTGTTCTTGAATCAGTTGAGTTTGGTAGGGGTCAGTTTCAGACACTTCTTCCTGCTTGTCCTGTCCTTGAGGAATTAATGCTGCTTAATATGGAGTGGAAGGATAGGAATGTGATCTTGTCAAGTTCAAGCCTTAAGAACCTTAAGATTACCTCCGAAGACGGCTGTTTAGGCACTTTGTCATTCGATACACCGAATCTTGTTTTCTTAGACTACTATGATTACGTTGCAGAGGATTATCCAATAGTAAACTTGAAAAACTTAGTTGAGGTTGGGATCAACCTTGTTCTTACTGCAGATCGAATCAATCGAGCAAGAGATAATGTGTGGAACCTAATTCATGGAATACAAAACGCTGAGATCTTTCACATATCCCCTGTTACTTTCGAGGTGCTCTCTCTTTCCTGTGAAGCCATGCCGGTTTTTAAAAACCTTACCACTTTAAATATTAGGACTGTGATGCAGCAAGGATGGCAAGCAATGCCACTTCTTCTAAAGAACTGTCCAAATTTGGAAACTCTGTACCTTGGGGGACTCTTGCACACTGTCACGAATAAATGCGGGGATGTTTGTGACTGCATTCCTAGAAAGAAGAAAGGGCGCTCGCTCATGGCTTGCCCTGTGAATAAGATACAGATTCAAGGATTTAGAGGAACAATCAGAGAGGTGCACATGATAAAGCATTTCTTGGACTTTTGTCCGAGTTTGAAGGAGATGGAGATAATTGTCGAAACAAAGGAACCTACTCTGTTTGAAATCCCTAAATGGCTTGAAATTGTCGAGGATACGCTGATGCAATACAACGAGATGTCGAGTTGCACTATTAATTACAGGGTGCTGGCTCCCTTGTACTGGAGGTGGACTCGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

457

Amino Acids

52.49

Weight (kDa)

5.38

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 43 7.3e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 89 - 407 7.2e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 105 - 220 1.4e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 345
AciI CCGC 2 cut(s) 345, 1062
AclWI GGATC 4 cut(s) 27, 296, 324, 785
AcsI RAATTY 3 cut(s) 204, 272, 1009
AcuI CTGAAG 1 cut(s) 10
AfaI GTAC 2 cut(s) 1025, 1352
AfiI CCNNNNNNNGG 2 cut(s) 182, 1353
AflII CTTAAG 3 cut(s) 494, 635, 644
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 9 cut(s) 93, 154, 512, 630, 757, 1142, 1210, 1256, 1274
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw21I GWGCWC 2 cut(s) 897, 1173
Alw26I GTCTC 1 cut(s) 149
Alw44I GTGCAC 1 cut(s) 1169
AlwI GGATC 4 cut(s) 27, 296, 324, 785
ApaLI GTGCAC 1 cut(s) 1169
ApeKI GCWGC 4 cut(s) 86, 394, 583, 964
ApoI RAATTY 3 cut(s) 204, 272, 1009
AseI ATTAAT 2 cut(s) 578, 1326
AspLEI GCGC 2 cut(s) 257, 1104
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 1173
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 2 cut(s) 897, 1173
BbvI GCAGC 4 cut(s) 73, 381, 570, 976
BccI CCATC 3 cut(s) 10, 966, 1210
BceAI ACGGC 1 cut(s) 679
BciVI GTATCC 1 cut(s) 1279
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 1086
BfmI CTRYAG 1 cut(s) 795
BfoI RGCGCY 2 cut(s) 258, 1105
BfrI CTTAAG 3 cut(s) 494, 635, 644
BfuI GTATCC 1 cut(s) 1279
BglII AGATCT 1 cut(s) 861
BisI GCNGC 4 cut(s) 87, 395, 584, 965
BlsI GCNGC 4 cut(s) 88, 396, 585, 966
BmiI GGNNCC 3 cut(s) 833, 1242, 1344
BmsI GCATC 3 cut(s) 480, 951, 1284
BoxI GACNNNNGTC 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 666
BplI GAGNNNNNCTC 3 cut(s) 881, 913, 1348
Bpu14I TTCGAA 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 1027
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 1353
Bse118I RCCGGY 1 cut(s) 919
Bse1I ACTGG 2 cut(s) 298, 1358
Bse3DI GCAATG 2 cut(s) 245, 987
BseDI CCNNGG 1 cut(s) 1027
BseGI GGATG 4 cut(s) 65, 172, 977, 1072
BseLI CCNNNNNNNGG 2 cut(s) 182, 1353
BseMI GCAATG 2 cut(s) 245, 987
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 2 cut(s) 298, 1358
BseSI GKGCMC 1 cut(s) 1173
BseXI GCAGC 4 cut(s) 73, 381, 570, 976
Bsh1236I CGCG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 897, 1173
BsiSI CCGG 2 cut(s) 38, 920
BslFI GGGAC 3 cut(s) 122, 482, 1047
BslI CCNNNNNNNGG 2 cut(s) 182, 1353
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 3 cut(s) 122, 482, 1047
BsmI GAATGC 1 cut(s) 1080
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 897, 1173
Bsp143I GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
BspACI CCGC 2 cut(s) 345, 1062
BspCNI CTCAG 1 cut(s) 850
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 833, 1242, 1344
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 4 cut(s) 27, 296, 324, 785
BspT104I TTCGAA 1 cut(s) 378
BspTI CTTAAG 3 cut(s) 494, 635, 644
BsrDI GCAATG 2 cut(s) 245, 987
BsrFI RCCGGY 1 cut(s) 919
BsrI ACTGG 2 cut(s) 298, 1358
BssAI RCCGGY 1 cut(s) 919
BssECI CCNNGG 1 cut(s) 1027
BssMI GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
BssT1I CCWWGG 1 cut(s) 1027
Bst4CI ACNGT 4 cut(s) 311, 958, 1004, 1048
Bst6I CTCTTC 1 cut(s) 29
BstAFI CTTAAG 3 cut(s) 494, 635, 644
BstAPI GCANNNNNTGC 1 cut(s) 982
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 978, 1106, 1117, 1341
BstDEI CTNAG 3 cut(s) 709, 763, 858
BstF5I GGATG 4 cut(s) 65, 172, 977, 1072
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 2 cut(s) 258, 1105
BstHHI GCGC 2 cut(s) 257, 1104
BstKTI GATC 8 cut(s) 22, 304, 319, 457, 618, 780, 802, 864
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
BstMWI GCNNNNNNNGC 3 cut(s) 672, 973, 982
BstNSI RCATGY 1 cut(s) 481
BstPAI GACNNNNGTC 1 cut(s) 1197
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 1 cut(s) 1173
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 4 cut(s) 73, 381, 570, 976
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 19, 861
BstYI RGATCY 2 cut(s) 19, 861
BsuI GTATCC 1 cut(s) 1279
BtsCI GGATG 4 cut(s) 65, 172, 977, 1072
BtsIMutI CAGTG 1 cut(s) 1044
Cac8I GCNNGC 4 cut(s) 978, 1106, 1117, 1341
CfoI GCGC 2 cut(s) 257, 1104
Cfr10I RCCGGY 1 cut(s) 919
Csp6I GTAC 2 cut(s) 1024, 1351
CviAII CATG 7 cut(s) 220, 370, 478, 842, 916, 1111, 1174
CviJI RGCY 8 cut(s) 86, 433, 633, 666, 914, 1115, 1270, 1343
CviKI_1 RGCY 8 cut(s) 86, 433, 633, 666, 914, 1115, 1270, 1343
CviQI GTAC 2 cut(s) 1024, 1351
DdeI CTNAG 3 cut(s) 709, 763, 858
DpnI GATC 8 cut(s) 21, 303, 318, 456, 617, 779, 801, 863
DpnII GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
DraI TTTAAA 2 cut(s) 928, 945
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 1027
Eco32I GATATC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 1027
ErhI CCWWGG 1 cut(s) 1027
FaeI CATG 7 cut(s) 223, 373, 481, 845, 919, 1114, 1177
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 3 cut(s) 122, 482, 1047
FatI CATG 7 cut(s) 219, 369, 477, 841, 915, 1110, 1173
FauI CCCGC 1 cut(s) 1055
Fnu4HI GCNGC 4 cut(s) 87, 395, 584, 965
FokI GGATG 4 cut(s) 52, 159, 984, 1079
Fsp4HI GCNGC 4 cut(s) 87, 395, 584, 965
FspBI CTAG 1 cut(s) 1086
GlaI GCGC 2 cut(s) 256, 1103
GluI GCNGC 4 cut(s) 87, 395, 584, 965
HaeII RGCGCY 2 cut(s) 258, 1105
HapII CCGG 2 cut(s) 38, 920
HhaI GCGC 2 cut(s) 257, 1104
Hin1II CATG 7 cut(s) 223, 373, 481, 845, 919, 1114, 1177
Hin6I GCGC 2 cut(s) 255, 1102
HinP1I GCGC 2 cut(s) 255, 1102
HinfI GANTC 9 cut(s) 5, 158, 499, 512, 697, 804, 1035, 1138, 1363
HpaII CCGG 2 cut(s) 38, 920
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 4 cut(s) 188, 751, 1171, 1362
Hpy188I TCNGA 7 cut(s) 10, 163, 213, 543, 658, 1163, 1203
Hpy188III TCNNGA 4 cut(s) 146, 305, 509, 1051
Hpy8I GTNNAC 4 cut(s) 188, 751, 1171, 1362
HpyAV CCTTC 3 cut(s) 80, 595, 1204
HpyCH4III ACNGT 4 cut(s) 311, 958, 1004, 1048
HpyCH4IV ACGT 1 cut(s) 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 672, 973, 982
HpyF3I CTNAG 3 cut(s) 709, 763, 858
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 7 cut(s) 223, 373, 481, 845, 919, 1114, 1177
HspAI GCGC 2 cut(s) 255, 1102
Kzo9I GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
LmnI GCTCC 1 cut(s) 1348
Lsp1109I GCAGC 4 cut(s) 73, 381, 570, 976
LweI GCATC 3 cut(s) 480, 951, 1284
MaeI CTAG 1 cut(s) 1086
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 4 cut(s) 33, 880, 1048, 1073
MalI GATC 8 cut(s) 21, 303, 318, 456, 617, 779, 801, 863
MboI GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
MflI RGATCY 2 cut(s) 19, 861
MhlI GDGCHC 2 cut(s) 897, 1173
MluCI AATT 8 cut(s) 204, 272, 575, 837, 1009, 1224, 1275, 1327
MlyI GAGTC 4 cut(s) 152, 493, 1029, 1357
MmeI TCCRAC 2 cut(s) 98, 302
MspCI CTTAAG 3 cut(s) 494, 635, 644
MspI CCGG 2 cut(s) 38, 920
Mva1269I GAATGC 1 cut(s) 1080
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 672, 973, 982
NdeII GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
NlaIII CATG 7 cut(s) 223, 373, 481, 845, 919, 1114, 1177
NlaIV GGNNCC 3 cut(s) 833, 1242, 1344
NmuCI GTSAC 2 cut(s) 1048, 1073
NspI RCATGY 1 cut(s) 481
NspV TTCGAA 1 cut(s) 378
PciI ACATGT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 808
PctI GAATGC 1 cut(s) 1080
PfeI GAWTC 4 cut(s) 512, 697, 804, 1138
PkrI GCNGC 4 cut(s) 88, 396, 585, 966
PleI GAGTC 4 cut(s) 152, 493, 1029, 1357
PpsI GAGTC 4 cut(s) 152, 493, 1029, 1357
PscI ACATGT 1 cut(s) 477
PshAI GACNNNNGTC 1 cut(s) 1197
PshBI ATTAAT 2 cut(s) 578, 1326
PspN4I GGNNCC 3 cut(s) 833, 1242, 1344
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 2 cut(s) 19, 861
RsaI GTAC 2 cut(s) 1025, 1352
RsaNI GTAC 2 cut(s) 1024, 1351
SatI GCNGC 4 cut(s) 87, 395, 584, 965
Sau3AI GATC 8 cut(s) 19, 301, 316, 454, 615, 777, 799, 861
SchI GAGTC 4 cut(s) 152, 493, 1029, 1357
SduI GDGCHC 2 cut(s) 897, 1173
SfaNI GCATC 3 cut(s) 480, 951, 1284
SfcI CTRYAG 1 cut(s) 795
SfuI TTCGAA 1 cut(s) 378
SmlI CTYRAG 4 cut(s) 494, 569, 635, 644
SmoI CTYRAG 4 cut(s) 494, 569, 635, 644
Sse9I AATT 8 cut(s) 204, 272, 575, 837, 1009, 1224, 1275, 1327
SsiI CCGC 2 cut(s) 345, 1062
SspI AATATT 2 cut(s) 389, 949
SspMI CTAG 1 cut(s) 1086
StyI CCWWGG 1 cut(s) 1027
TaaI ACNGT 4 cut(s) 311, 958, 1004, 1048
TaiI ACGT 1 cut(s) 729
TasI AATT 8 cut(s) 204, 272, 575, 837, 1009, 1224, 1275, 1327
TatI WGTACW 1 cut(s) 1350
TfiI GAWTC 4 cut(s) 512, 697, 804, 1138
TscAI CASTG 1 cut(s) 1051
TseFI GTSAC 2 cut(s) 1048, 1073
TseI GCWGC 4 cut(s) 86, 394, 583, 964
Tsp45I GTSAC 2 cut(s) 1048, 1073
TspDTI ATGAA 4 cut(s) 161, 208, 358, 830
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 1051
Vha464I CTTAAG 3 cut(s) 494, 635, 644
VneI GTGCAC 1 cut(s) 1169
VspI ATTAAT 2 cut(s) 578, 1326
XapI RAATTY 3 cut(s) 204, 272, 1009
XceI RCATGY 1 cut(s) 481
XspI CTAG 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.