AT3G58875

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003780
Physical Location & Seq
Reverse (-)
21766358 .. 21767298
941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58875.1

Sequence Viewer

Length: 492 bp
ATGGACATGATCAAGCATTTCTTGGACTATTTCTCCTGCTTGGAGGAGCTGGATATCTATGTTAAAGATGGTCGTCCACAGTCCCCTATAACGCCGGATTCTAACCCATTCAACGACTTATCGGGTCGCAATGTTAAATTCAAGATTAGAACTGGAACGCCTCGAAGGAACGCGAACCGTAGACGGAGGGTTCCGGTTTCCGTCCATAGACGCTCTCCGCCGACGCACCAAACCAACTACAACTCTCCCGGAAAACTAGCCACTCCGACACACCGGATCGACGGTGTCGGTTCCATACCAAGCATCCCAACACACTGGGGATTAACCCCTTTCTTCTATGACCGGATCTTCGCCGATTTCCTTAAGCCGTTACTCTCCAAACCGGGCGGATGGATGCCAAACGCGGCGGATCCAGAAGTCGGAGCTCACCCAAACCGACTGAACCCTTGCCTCCACATTAGCCATCTAAGATCCAAACAGATCCACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

10.14

Isoelectric Point (pI)

63.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AccII CGCG 2 cut(s) 173, 404
AciI CCGC 4 cut(s) 218, 387, 404, 407
AclWI GGATC 6 cut(s) 284, 353, 404, 417, 465, 475
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 419
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 112, 142
AluBI AGCT 2 cut(s) 49, 425
AluI AGCT 2 cut(s) 49, 425
Alw21I GWGCWC 1 cut(s) 427
AlwI GGATC 6 cut(s) 284, 353, 404, 417, 465, 475
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AsuC2I CCSGG 2 cut(s) 249, 384
AsuHPI GGTGA 1 cut(s) 419
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 427
BccI CCATC 3 cut(s) 62, 384, 471
BceAI ACGGC 1 cut(s) 352
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 2 cut(s) 249, 384
BfaI CTAG 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 249, 384
BmiI GGNNCC 3 cut(s) 192, 292, 411
BmrFI CCNGG 2 cut(s) 249, 384
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 312, 384
BmuI ACTGGG 1 cut(s) 325
BpuMI CCSGG 2 cut(s) 249, 384
BsaWI WCCGGW 3 cut(s) 193, 273, 342
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 157, 320
Bse3DI GCAATG 1 cut(s) 136
BseGI GGATG 3 cut(s) 303, 395, 399
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 157, 320
BseRI GAGGAG 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 173, 404
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 6 cut(s) 95, 194, 249, 274, 343, 383
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 6 cut(s) 9, 276, 345, 409, 470, 480
BspACI CCGC 4 cut(s) 218, 387, 404, 407
BspFNI CGCG 2 cut(s) 173, 404
BspLI GGNNCC 3 cut(s) 192, 292, 411
BspPI GGATC 6 cut(s) 284, 353, 404, 417, 465, 475
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 2 cut(s) 157, 320
BssMI GATC 6 cut(s) 9, 276, 345, 409, 470, 480
Bst4CI ACNGT 4 cut(s) 81, 179, 284, 488
BstAFI CTTAAG 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 303, 395, 399
BstFNI CGCG 2 cut(s) 173, 404
BstKTI GATC 6 cut(s) 12, 279, 348, 412, 473, 483
BstMBI GATC 6 cut(s) 9, 276, 345, 409, 470, 480
BstSCI CCNGG 2 cut(s) 247, 382
BstUI CGCG 2 cut(s) 173, 404
BstX2I RGATCY 4 cut(s) 345, 409, 470, 480
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 4 cut(s) 345, 409, 470, 480
BtsCI GGATG 3 cut(s) 303, 395, 399
BtsIMutI CAGTG 1 cut(s) 313
CseI GACGC 2 cut(s) 219, 232
CviAII CATG 1 cut(s) 7
CviJI RGCY 5 cut(s) 49, 260, 367, 425, 462
CviKI_1 RGCY 5 cut(s) 49, 260, 367, 425, 462
DdeI CTNAG 1 cut(s) 467
DpnI GATC 6 cut(s) 11, 278, 347, 411, 472, 482
DpnII GATC 6 cut(s) 9, 276, 345, 409, 470, 480
EciI GGCGGA 3 cut(s) 207, 402, 422
Ecl136II GAGCTC 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 1 cut(s) 10
FaiI YATR 6 cut(s) 8, 60, 89, 207, 296, 339
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 6
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 3 cut(s) 290, 402, 406
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 405
HapII CCGG 6 cut(s) 95, 194, 249, 274, 343, 383
HgaI GACGC 2 cut(s) 219, 232
Hin1II CATG 1 cut(s) 10
HinfI GANTC 1 cut(s) 98
HpaII CCGG 6 cut(s) 95, 194, 249, 274, 343, 383
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 77, 182
Hpy188I TCNGA 2 cut(s) 267, 422
Hpy188III TCNNGA 2 cut(s) 142, 413
Hpy8I GTNNAC 2 cut(s) 77, 182
Hpy99I CGWCG 2 cut(s) 226, 284
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 4 cut(s) 81, 179, 284, 488
HpyF3I CTNAG 1 cut(s) 467
Hsp92II CATG 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 6 cut(s) 9, 276, 345, 409, 470, 480
LmnI GCTCC 2 cut(s) 46, 422
LweI GCATC 2 cut(s) 312, 384
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 369
MalI GATC 6 cut(s) 11, 278, 347, 411, 472, 482
MboI GATC 6 cut(s) 9, 276, 345, 409, 470, 480
MboII GAAGA 2 cut(s) 325, 340
MflI RGATCY 4 cut(s) 345, 409, 470, 480
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 290, 400
MnlI CCTC 4 cut(s) 37, 171, 180, 461
MseI TTAA 4 cut(s) 63, 135, 323, 363
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 6 cut(s) 95, 194, 249, 274, 343, 383
MspR9I CCNGG 2 cut(s) 249, 384
MvnI CGCG 2 cut(s) 173, 404
NciI CCSGG 2 cut(s) 249, 384
NdeII GATC 6 cut(s) 9, 276, 345, 409, 470, 480
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 3 cut(s) 192, 292, 411
PfeI GAWTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 427
PspN4I GGNNCC 3 cut(s) 192, 292, 411
PsuI RGATCY 4 cut(s) 345, 409, 470, 480
PsyI GACNNNGTC 1 cut(s) 284
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 4 cut(s) 63, 135, 323, 363
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 6 cut(s) 9, 276, 345, 409, 470, 480
ScrFI CCNGG 2 cut(s) 249, 384
SduI GDGCHC 1 cut(s) 427
SetI ASST 2 cut(s) 51, 427
SfaNI GCATC 2 cut(s) 312, 384
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 137
SsiI CCGC 4 cut(s) 218, 387, 404, 407
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 247, 382
TaaI ACNGT 4 cut(s) 81, 179, 284, 488
TaqI TCGA 2 cut(s) 163, 279
TasI AATT 1 cut(s) 137
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 4 cut(s) 63, 135, 323, 363
Tru9I TTAA 4 cut(s) 63, 135, 323, 363
TscAI CASTG 1 cut(s) 320
TspGWI ACGGA 2 cut(s) 190, 199
TspRI CASTG 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.