AT5G38392

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003780
Physical Location & Seq
Forward (+)
15369685 .. 15370338
654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38392.1

Sequence Viewer

Length: 654 bp
ATGGATCTCTTAAGCAATCTACCAGACGAGCTTCTTTGTCATATATTGTCCTTCTTTACCACAAAGGAGGCTGCTTTGACTTCTGTTCTCTCAAAGAGGTGGCGACATCTGTTTGCACTTGTCCCTAATCTTGACATTGATGACTCTATGTTTCTATACCCTGAAGAGGGTAAGCGTGATAGGAACGAAATTCAACAGAGCTTCGTTGAATTTGTCGATAGATTATTGTTATTGCAGGGTAAATCTCCCACTAGAAAAGTCTCCCTCAAGTGTATAAGTATGTCTGATCCAGACCGCCTAGATGATTGGATAAGTAATGTGTTGGCTCGTGGTGTTTCCGAACTTGATCTGTCAATCGATTTGTGTATGGATGAATACATTCTCTTGTCTTCAAAACGTTTCGAGAGCAAGAATCTAGTTAGGTTGAAATTACACCGTATTTGTATTGGCCAACCGGAAAACCCTATTGGTTGGTTGGCTGGGGGAATATTATTACCAATGCTTAAAACTGTCCTACTTGAGTCAGTTGGGTTTTATGTTGATGAGGTTTTTCTTAGAGCTTTGCCTGTTCTTGAGGAATTAGTCATGGTTGATGTATTCTGTTCTGGAGCGTTAAGGATGTCATCGTGTCAAATGCAAGCCTCAAGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

217

Amino Acids

24.71

Weight (kDa)

5.17

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 5.5e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 295
AclI AACGTT 1 cut(s) 397
AclWI GGATC 2 cut(s) 12, 281
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 2 cut(s) 189, 209
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 4 cut(s) 194, 209, 393, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 3 cut(s) 31, 201, 560
AluI AGCT 3 cut(s) 31, 201, 560
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 12, 281
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 189, 209
Asp700I GAANNNNTTC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 450
BauI CACGAG 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 3 cut(s) 252, 299, 416
BfrI CTTAAG 1 cut(s) 10
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 627
BpuEI CTTGAG 4 cut(s) 251, 539, 593, 628
Bsa29I ATCGAT 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
BseCI ATCGAT 1 cut(s) 357
BseGI GGATG 2 cut(s) 376, 624
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 479
BshFI GGCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 357
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmAI GTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 450
Bsp143I GATC 3 cut(s) 4, 286, 346
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 450
BspDI ATCGAT 1 cut(s) 357
BspPI GGATC 2 cut(s) 12, 281
BspTI CTTAAG 1 cut(s) 10
BssMI GATC 3 cut(s) 4, 286, 346
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 437, 511
Bst6I CTCTTC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 376, 624
BstKTI GATC 3 cut(s) 7, 289, 349
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 3 cut(s) 4, 286, 346
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 2 cut(s) 376, 624
Cac8I GCNNGC 1 cut(s) 639
ClaI ATCGAT 1 cut(s) 357
CviAII CATG 1 cut(s) 586
CviJI RGCY 8 cut(s) 31, 71, 201, 326, 450, 479, 560, 641
CviKI_1 RGCY 8 cut(s) 31, 71, 201, 326, 450, 479, 560, 641
DdeI CTNAG 1 cut(s) 554
DpnI GATC 3 cut(s) 6, 288, 348
DpnII GATC 3 cut(s) 4, 286, 346
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 183
FaeI CATG 1 cut(s) 589
FaiI YATR 9 cut(s) 42, 44, 149, 157, 275, 281, 368, 537, 587
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 383, 631
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 252, 299, 416
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 455
Hin1II CATG 1 cut(s) 589
HinfI GANTC 3 cut(s) 143, 412, 521
HpaII CCGG 1 cut(s) 455
Hpy188I TCNGA 2 cut(s) 286, 340
Hpy188III TCNNGA 6 cut(s) 131, 290, 403, 572, 606, 645
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 2 cut(s) 437, 511
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 116, 235, 637
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 1 cut(s) 589
Kzo9I GATC 3 cut(s) 4, 286, 346
LmnI GCTCC 1 cut(s) 608
LpnPI CCDG 8 cut(s) 36, 174, 221, 303, 465, 468, 579, 591
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 3 cut(s) 252, 299, 416
MaeII ACGT 1 cut(s) 397
MalI GATC 3 cut(s) 6, 288, 348
MboI GATC 3 cut(s) 4, 286, 346
MboII GAAGA 2 cut(s) 176, 381
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 4 cut(s) 189, 209, 428, 578
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 2 cut(s) 137, 530
MnlI CCTC 7 cut(s) 61, 90, 160, 275, 538, 568, 652
Mox20I TGGCCA 1 cut(s) 450
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 450
MseI TTAA 3 cut(s) 11, 504, 614
Msp20I TGGCCA 1 cut(s) 450
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 455
NdeII GATC 3 cut(s) 4, 286, 346
NlaIII CATG 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 137, 529
PpsI GAGTC 2 cut(s) 137, 529
Psp1406I AACGTT 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 3 cut(s) 11, 504, 614
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 4, 286, 346
SchI GAGTC 2 cut(s) 137, 530
SetI ASST 7 cut(s) 33, 101, 203, 400, 425, 549, 562
SmlI CTYRAG 5 cut(s) 10, 266, 518, 572, 643
SmoI CTYRAG 5 cut(s) 10, 266, 518, 572, 643
Sse9I AATT 4 cut(s) 189, 209, 428, 578
SsiI CCGC 1 cut(s) 295
SspI AATATT 1 cut(s) 489
SspMI CTAG 3 cut(s) 252, 299, 416
TaaI ACNGT 2 cut(s) 437, 511
TaiI ACGT 1 cut(s) 400
TaqI TCGA 3 cut(s) 216, 357, 402
TasI AATT 4 cut(s) 189, 209, 428, 578
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 3 cut(s) 11, 504, 614
Tru9I TTAA 3 cut(s) 11, 504, 614
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 2 cut(s) 189, 209
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 252, 299, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.