Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

21620278 .. 21622611

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G58280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGATTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCTTCTGTGTCTCATCTTTCCTCTCCTCTTCCATCGCTTAGTCGCCTCTCTCTTCGTTGTTGCAGCTCTCTTCCTGCTCACGATATGGAGACAAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATACATCTGGTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACCATAAGGCTTACTTATCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTACACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGTATCTCCTCTGCTCAGGACTTTGCAAACAGCGGTCGGAACTTTTGGTGGGGAAGGTTACAAAGATGGTGTAAATACACCTCTGCTTATGACCGCAGGTGCTGGAAACAGCGATCGTCCTGCTATATCAAGGTTAAATCGTCCACCGTTCATTGCGGTTGAATCCTGCCGAGAACATTTGGGTGTTCATCCTTGTGACAGAAGAAGCAATATCACCAAGTACCGCGAATTATTCCCTGCGATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTTGTGGAAGCCTGACATTAGAGAGGAGGATAAAGATATTGCGACCAGAGGCGTGAAGTTCTTTAACTGGTTGAGTACAAGGAAAGAAAAAGAGATTGCGGTTGTAACTCATAGTGGGTTCTTGTATCAAACATTAAACTCATTTGGAAACGATTGTGATCCATCTGTGAAAAACGAGATTTCTAAAAAATTTGTCAACTGTGAACTCCGTTCATTTGTTCTTGTAGATAAATGCATGAGCAGTTCGGATCCTCCAATGACCAACTATCCCGGAACAATACTTACCGGAGAAGATGCTTCTAGTGATATTGCTGATCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

318

Amino Acids

35.48

Weight (kDa)

6.39

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccII	CGCG	1 cut(s)	582
AciI	CCGC	5 cut(s)	389, 450, 512, 580, 731
AclWI	GGATC	4 cut(s)	261, 785, 875, 888
AcsI	RAATTY	1 cut(s)	821
AfaI	GTAC	2 cut(s)	578, 709
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	218, 518
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	57, 125, 184
AlwI	GGATC	4 cut(s)	261, 785, 875, 888
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	3 cut(s)	155, 199, 562
BamHI	GGATCC	1 cut(s)	880
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	4 cut(s)	82, 279, 416, 802
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BclI	TGATCA	1 cut(s)	946
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	3 cut(s)	57, 125, 184
BfaI	CTAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	443
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	903
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	1 cut(s)	903
BmsI	GCATC	2 cut(s)	253, 916
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	903
BsaBI	GATNNNNATC	2 cut(s)	267, 789
BsaWI	WCCGGW	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	2 cut(s)	267, 789
BseGI	GGATG	2 cut(s)	290, 544
BseJI	GATNNNNATC	2 cut(s)	267, 789
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	240, 385
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	3 cut(s)	57, 354, 671
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	582
Bsh1285I	CGRYCG	2 cut(s)	393, 472
BshFI	GGCC	1 cut(s)	150
BsiEI	CGRYCG	2 cut(s)	393, 472
BsiSI	CCGG	2 cut(s)	903, 918
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	3 cut(s)	57, 125, 184
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	5 cut(s)	253, 469, 790, 880, 946
BspACI	CCGC	5 cut(s)	389, 450, 512, 580, 731
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	241, 384
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	882
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	4 cut(s)	261, 785, 875, 888
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	704
BssMI	GATC	5 cut(s)	253, 469, 790, 880, 946
Bst4CI	ACNGT	3 cut(s)	167, 504, 833
Bst6I	CTCTTC	3 cut(s)	75, 99, 117
BstDEI	CTNAG	3 cut(s)	80, 249, 371
BstF5I	GGATG	2 cut(s)	290, 544
BstFNI	CGCG	1 cut(s)	582
BstKTI	GATC	5 cut(s)	256, 472, 793, 883, 949
BstMAI	GTCTC	3 cut(s)	57, 125, 184
BstMBI	GATC	5 cut(s)	253, 469, 790, 880, 946
BstMCI	CGRYCG	2 cut(s)	393, 472
BstNSI	RCATGY	2 cut(s)	197, 317
BstSCI	CCNGG	1 cut(s)	901
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	253, 880
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	2 cut(s)	253, 880
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	290, 544
BveI	ACCTGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	577, 708
CviAII	CATG	3 cut(s)	194, 314, 868
CviJI	RGCY	4 cut(s)	108, 150, 239, 643
CviKI_1	RGCY	4 cut(s)	108, 150, 239, 643
CviQI	GTAC	2 cut(s)	577, 708
DdeI	CTNAG	3 cut(s)	80, 249, 371
DpnI	GATC	5 cut(s)	255, 471, 792, 882, 948
DpnII	GATC	5 cut(s)	253, 469, 790, 880, 946
Eam1104I	CTCTTC	3 cut(s)	75, 99, 117
EarI	CTCTTC	3 cut(s)	75, 99, 117
Eco147I	AGGCCT	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	869
FaeI	CATG	3 cut(s)	197, 317, 871
FaiI	YATR	9 cut(s)	128, 179, 195, 234, 315, 446, 482, 744, 869
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	3 cut(s)	193, 313, 867
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	297, 531
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	933
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	903, 918
Hin1II	CATG	3 cut(s)	197, 317, 871
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	3 cut(s)	4, 205, 518
HpaII	CCGG	2 cut(s)	903, 918
HphI	GGTGA	3 cut(s)	155, 199, 562
Hpy166II	GTNNAC	3 cut(s)	500, 829, 836
Hpy188I	TCNGA	4 cut(s)	250, 395, 880, 951
Hpy188III	TCNNGA	2 cut(s)	122, 373
Hpy8I	GTNNAC	3 cut(s)	500, 829, 836
HpyAV	CCTTC	2 cut(s)	212, 404
HpyCH4III	ACNGT	3 cut(s)	167, 504, 833
HpyCH4V	TGCA	6 cut(s)	105, 171, 266, 323, 382, 867
HpyF3I	CTNAG	3 cut(s)	80, 249, 371
Hsp92II	CATG	3 cut(s)	197, 317, 871
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	253, 469, 790, 880, 946
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	2 cut(s)	253, 916
MaeI	CTAG	1 cut(s)	933
MaeIII	GTNAC	3 cut(s)	413, 551, 736
MalI	GATC	5 cut(s)	255, 471, 792, 882, 948
MboI	GATC	5 cut(s)	253, 469, 790, 880, 946
MboII	GAAGA	8 cut(s)	36, 62, 86, 104, 238, 570, 638, 935
MflI	RGATCY	2 cut(s)	253, 880
MluCI	AATT	4 cut(s)	301, 342, 584, 821
MmeI	TCCRAC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	869
MseI	TTAA	4 cut(s)	318, 491, 696, 767
MslI	CAYNNNNRTG	4 cut(s)	312, 318, 537, 549
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	903, 918
MspR9I	CCNGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	582
NciI	CCSGG	1 cut(s)	903
NdeII	GATC	5 cut(s)	253, 469, 790, 880, 946
NlaIII	CATG	3 cut(s)	197, 317, 871
NlaIV	GGNNCC	1 cut(s)	882
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	869
NspI	RCATGY	2 cut(s)	197, 317
PaqCI	CACCTGC	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	4, 205, 518
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	1 cut(s)	107
Ple19I	CGATCG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	882
PsrI	GAACNNNNNNTAC	2 cut(s)	898, 930
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	253, 880
PvuI	CGATCG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	578, 709
RsaNI	GTAC	2 cut(s)	577, 708
RseI	CAYNNNNRTG	4 cut(s)	312, 318, 537, 549
SaqAI	TTAA	4 cut(s)	318, 491, 696, 767
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	5 cut(s)	253, 469, 790, 880, 946
ScrFI	CCNGG	1 cut(s)	903
SetI	ASST	7 cut(s)	23, 110, 280, 415, 439, 457, 491
SfaNI	GCATC	2 cut(s)	253, 916
SmiMI	CAYNNNNRTG	4 cut(s)	312, 318, 537, 549
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	301, 342, 584, 821
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	5 cut(s)	389, 450, 512, 580, 731
SspMI	CTAG	1 cut(s)	933
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	901
TaaI	ACNGT	3 cut(s)	167, 504, 833
TasI	AATT	4 cut(s)	301, 342, 584, 821
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	3 cut(s)	4, 205, 518
Tru1I	TTAA	4 cut(s)	318, 491, 696, 767
Tru9I	TTAA	4 cut(s)	318, 491, 696, 767
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	6 cut(s)	21, 496, 533, 597, 639, 834
TspGWI	ACGGA	1 cut(s)	830
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	2 cut(s)	197, 317
XspI	CTAG	1 cut(s)	933
Zsp2I	ATGCAT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.