Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

48978640 .. 48980668

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1392500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCAGACAGCAGTGGGTGTTTTTGGGGGTGAAGCATACACAGATGGGATAGATGTACCTCCTCTAATGGTTGCAAATGCTGGGAACAGTAACCATCCTGCAATTTCAAGTCTAAACTCCCCACCATTTATAGCAGTGAAGCTTTGCCGCGAACGTTTGGGTGTTCATCCATGTGACAAGAGGAGAAGCATTAGCGAGTATCGGCCTTTTTTTCCTGCAATTGATTTTTCACTGGCAAAAAATGAGGACGACATTTTGTGGACGCCTGACATTAGAGAGAAAAATGAACAAGTGGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACGCGTAAAGAGAAGGAGATTGCAATTGTTAGTCACAGTGGATTCTTGTTTCATACCTTGAGTGCTTTTGGAAATGATTGCCATCCGTCTATCAAGAGCGAAATATGCACCAAGTGTTATGGTGGTTGTTTTATCCCAACTTTTAGGTCAAGAGCATGCACATTGCATTCTGCAGCACAGGGTAATGTTTATAATCTTATGTGTATAAAAAATGTTCTGCGCATCTCGGATATTTATTCTTTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

8.42

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
Acc16I	TGCGCA	1 cut(s)	551
AccII	CGCG	2 cut(s)	150, 334
AciI	CCGC	1 cut(s)	148
AclI	AACGTT	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	57
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	108, 319
AluBI	AGCT	2 cut(s)	142, 299
AluI	AGCT	2 cut(s)	142, 299
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	296, 503
AspLEI	GCGC	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	308, 515
BccI	CCATC	3 cut(s)	38, 102, 420
BfaI	CTAG	2 cut(s)	300, 577
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	3 cut(s)	148, 297, 504
BlsI	GCNGC	3 cut(s)	149, 298, 505
BmsI	GCATC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	237, 326
Bse3DI	GCAATG	1 cut(s)	491
Bse8I	GATNNNNATC	1 cut(s)	411
BseGI	GGATG	3 cut(s)	94, 166, 412
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	237, 326
BseRI	GAGGAG	2 cut(s)	51, 196
BseXI	GCAGC	2 cut(s)	308, 515
BseYI	CCCAGC	1 cut(s)	80
Bsh1236I	CGCG	2 cut(s)	150, 334
BshFI	GGCC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	150, 334
BspMAI	CTGCAG	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	237, 326
BssNI	GRCGYC	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	89, 368
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	487
BstF5I	GGATG	3 cut(s)	94, 166, 412
BstFNI	CGCG	2 cut(s)	150, 334
BstHHI	GCGC	1 cut(s)	552
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	2 cut(s)	150, 334
BstV1I	GCAGC	2 cut(s)	308, 515
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	94, 166, 412
BtsI	GCAGTG	2 cut(s)	18, 141
BtsIMutI	CAGTG	4 cut(s)	18, 141, 230, 373
Cac8I	GCNNGC	1 cut(s)	487
CfoI	GCGC	1 cut(s)	552
CseI	GACGC	2 cut(s)	271, 340
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	171, 486
CviJI	RGCY	3 cut(s)	142, 205, 299
CviKI_1	RGCY	3 cut(s)	142, 205, 299
CviQI	GTAC	1 cut(s)	56
DraI	TTTAAA	1 cut(s)	573
DraIII	CACNNNGTG	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	329
FaeI	CATG	2 cut(s)	174, 489
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	170, 485
Fnu4HI	GCNGC	3 cut(s)	148, 297, 504
FokI	GGATG	3 cut(s)	81, 153, 399
Fsp4HI	GCNGC	3 cut(s)	148, 297, 504
FspBI	CTAG	2 cut(s)	300, 577
FspI	TGCGCA	1 cut(s)	551
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	3 cut(s)	148, 297, 504
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	205
HgaI	GACGC	2 cut(s)	271, 340
HhaI	GCGC	1 cut(s)	552
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	174, 489
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	261, 330
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	2 cut(s)	424, 480
Hpy8I	GTNNAC	2 cut(s)	261, 330
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	89, 368
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	9 cut(s)	4, 74, 101, 218, 353, 438, 489, 496, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	174, 489
HspAI	GCGC	1 cut(s)	550
LpnPI	CCDG	7 cut(s)	66, 111, 218, 228, 279, 307, 494
Lsp1109I	GCAGC	2 cut(s)	308, 515
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	2 cut(s)	300, 577
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	89, 173, 362
MfeI	CAATTG	2 cut(s)	219, 354
MluCI	AATT	3 cut(s)	102, 219, 354
MluI	ACGCGT	1 cut(s)	332
MnlI	CCTC	4 cut(s)	69, 72, 174, 238
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	171
MunI	CAATTG	2 cut(s)	219, 354
Mva1269I	GAATGC	1 cut(s)	496
MvnI	CGCG	2 cut(s)	150, 334
MwoI	GCNNNNNNNGC	1 cut(s)	435
NlaIII	CATG	2 cut(s)	174, 489
NmuCI	GTSAC	2 cut(s)	173, 362
NsbI	TGCGCA	1 cut(s)	551
NspI	RCATGY	1 cut(s)	489
PaeI	GCATGC	1 cut(s)	489
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	149, 298, 505
PsiI	TTATAA	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	3 cut(s)	148, 297, 504
SetI	ASST	6 cut(s)	61, 144, 157, 301, 389, 479
SfaNI	GCATC	1 cut(s)	561
SfcI	CTRYAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	3 cut(s)	102, 219, 354
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	300, 577
TaaI	ACNGT	2 cut(s)	89, 368
TaiI	ACGT	1 cut(s)	157
TasI	AATT	3 cut(s)	102, 219, 354
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	4 cut(s)	18, 141, 237, 373
TseFI	GTSAC	2 cut(s)	173, 362
TseI	GCWGC	2 cut(s)	296, 503
Tsp45I	GTSAC	2 cut(s)	173, 362
TspDTI	ATGAA	3 cut(s)	155, 300, 371
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	4 cut(s)	18, 141, 237, 373
XceI	RCATGY	1 cut(s)	489
XspI	CTAG	2 cut(s)	300, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.