Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

32269060 .. 32280764

Gene Structure 11705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACATCAGCCCAACACCAAGCCAATCAACAACTTCGGACGAGAGGGTCAACAACTCTGGTTCAACCAATCAACATCAGGCTCAACCGACGTGTCGTCCACCCGTTCGCCCACATTGAGATTCTGGTTCATGCTTTCGGGTTCGGGCAGAACGCCGGCTATTGCCAGGAGCAGGCTGAGGACGCCATTTATTCCTGCAACGGACGACCCACGGTGAACGGCTCGTCTTCGATTTGGCTCGGAGATTTGTACGCCGAGGAAGAGAGGGAGTTGCTCGTTGAGCTTCGTATTCCTACCTCGGTTGCTGGGAACCACCATTTGCTATCACGACTACTGAATGAAGCAAGGTCTCTCTATCGCTGCCCTAAATTGGTGATTTCTGTTCGTCTCAATCAGGTGAAGAAGATATCATCGCTAATTATTCCTGGGATTGGTCTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_2 zf-RING_11 zf-RING_2

Protein Analysis

147

Amino Acids

16.35

Weight (kDa)

9.25

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	3 cut(s)	172, 370, 431
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	65
AhdI	GACNNNNNGTC	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	165, 424
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	354, 392
ApeKI	GCWGC	1 cut(s)	360
AsuHPI	GGTGA	3 cut(s)	226, 385, 409
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	167, 426
BcoDI	GTCTC	2 cut(s)	354, 392
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	167, 426
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	2 cut(s)	167, 426
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	210, 255, 297, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 370, 431
Bse118I	RCCGGY	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	167, 426
BseDI	CCNNGG	4 cut(s)	210, 255, 297, 425
BseLI	CCNNNNNNNGG	3 cut(s)	172, 370, 431
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	172, 370, 431
BsmAI	GTCTC	2 cut(s)	354, 392
BsmBI	CGTCTC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	4 cut(s)	210, 255, 297, 425
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	167, 426
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	157, 174
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	210
BstMAI	GTCTC	2 cut(s)	354, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 280
BstNI	CCWGG	2 cut(s)	167, 426
BstSCI	CCNGG	2 cut(s)	165, 424
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	157, 174
Cfr10I	RCCGGY	1 cut(s)	155
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	8 cut(s)	11, 23, 82, 159, 176, 222, 238, 283
CviKI_1	RGCY	8 cut(s)	11, 23, 82, 159, 176, 222, 238, 283
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	177
DrdI	GACNNNNNNGTC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	165, 424
EcoRV	GATATC	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	134
FaiI	YATR	1 cut(s)	132
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	361
GsaI	CCCAGC	1 cut(s)	309
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	226, 385, 409
Hpy166II	GTNNAC	3 cut(s)	51, 100, 217
Hpy188I	TCNGA	2 cut(s)	39, 242
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	3 cut(s)	51, 100, 217
Hpy99I	CGWCG	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 280
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	347
MaeII	ACGT	1 cut(s)	91
MboII	GAAGA	4 cut(s)	219, 272, 412, 415
MluCI	AATT	2 cut(s)	368, 417
MnlI	CCTC	5 cut(s)	38, 172, 250, 258, 307
MroNI	GCCGGC	1 cut(s)	155
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	167, 426
MvaI	CCWGG	2 cut(s)	167, 426
MwoI	GCNNNNNNNGC	2 cut(s)	182, 280
NaeI	GCCGGC	1 cut(s)	157
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	165, 424
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	165, 424
PspN4I	GGNNCC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SatI	GCNGC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	167, 426
SetI	ASST	5 cut(s)	94, 285, 299, 350, 399
Sse9I	AATT	2 cut(s)	368, 417
StyD4I	CCNGG	2 cut(s)	165, 424
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	368, 417
TfiI	GAWTC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	119, 354
TspGWI	ACGGA	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.