Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

11713625 .. 11719967

Gene Structure 6343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACCGTTTCCGTTTCCTCTATATATACCCCCCACATCTCACATATTCCCCTCTCTGTCCCCACTCAGTTTTCAAAGTTACCAAAATCTAAACATTCAATCCTCCTCTGCTTCTCTTCTCCACCAGATATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGTTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTGCACAAGCATGTTCAGGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCACATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGTGGTGAAGCATACACAGATGGGATAAATGTACCTCCTCTAATGGTTGAAAATGCTGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCATGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATAATGATGACATTTTGTGGACACCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACACGTAAAGAAAAGAATATTGCAATTGTTACCCATAGTGGATTCTTGTACCACACCTTGAGTGCTTTTGGAAATGATTGCCATTCATCCATTAAGAGTGAAATATCCACGCACTTTGCCAATTGCGAGCTTCGTTCCATGGTAATTGTTGATAGGGGTTTGATAGGGTCAAATTCCACCTCAGCAACTAATTATCCTGGAAAAATTCCTCATGGGCTTGATCTTCCTAGTGATGTCGCAGATGAGAAGCATCCAGTTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

325

Amino Acids

35.87

Weight (kDa)

6.56

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	883, 915
AcuI	CTGAAG	1 cut(s)	710
AdeI	CACNNNGTG	2 cut(s)	190, 217
AfaI	GTAC	2 cut(s)	438, 761
AflIII	ACRYGT	2 cut(s)	246, 713
AgsI	TTSAA	6 cut(s)	75, 99, 455, 489, 521, 700
AjnI	CCWGG	2 cut(s)	186, 907
AluBI	AGCT	2 cut(s)	680, 841
AluI	AGCT	2 cut(s)	680, 841
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	471, 479, 677
ApoI	RAATTY	2 cut(s)	883, 915
AspS9I	GGNCC	2 cut(s)	232, 378
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	3 cut(s)	176, 202, 422
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	232, 378
BanI	GGYRCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	892
BbvI	GCAGC	3 cut(s)	466, 483, 689
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	2 cut(s)	188, 909
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	530
BfaI	CTAG	2 cut(s)	681, 939
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	138, 472, 480, 678
BlsI	GCNGC	4 cut(s)	139, 473, 481, 679
Bme1390I	CCNGG	3 cut(s)	188, 530, 909
Bme18I	GGWCC	2 cut(s)	232, 378
BmgT120I	GGNCC	2 cut(s)	232, 378
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	188, 530, 909
BmsI	GCATC	3 cut(s)	124, 256, 970
Bpu10I	CCTNAGC	2 cut(s)	374, 892
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	849
Bse1I	ACTGG	2 cut(s)	707, 965
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	188, 909
BseDI	CCNNGG	1 cut(s)	849
BseGI	GGATG	4 cut(s)	139, 547, 797, 961
BseJI	GATNNNNATC	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	80, 906
BseNI	ACTGG	2 cut(s)	707, 965
BseRI	GAGGAG	2 cut(s)	95, 432
BseXI	GCAGC	3 cut(s)	466, 483, 689
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	529
BslFI	GGGAC	2 cut(s)	44, 699
BsmFI	GGGAC	2 cut(s)	44, 699
BsnI	GGCC	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	256, 357, 931
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	79, 905
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	707, 965
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	3 cut(s)	256, 357, 931
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	188, 909
Bst4CI	ACNGT	2 cut(s)	7, 170
Bst6I	CTCTTC	1 cut(s)	121
BstBAI	YACGTR	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	198, 839
BstDEI	CTNAG	3 cut(s)	66, 374, 892
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	4 cut(s)	139, 547, 797, 961
BstKTI	GATC	3 cut(s)	259, 360, 934
BstMBI	GATC	3 cut(s)	256, 357, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	188, 909
BstNSI	RCATGY	4 cut(s)	200, 250, 320, 330
BstSCI	CCNGG	3 cut(s)	186, 528, 907
BstV1I	GCAGC	3 cut(s)	466, 483, 689
BsuRI	GGCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	4 cut(s)	139, 547, 797, 961
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 611
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	198, 839
Cfr13I	GGNCC	2 cut(s)	232, 378
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	437, 760
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	9 cut(s)	197, 247, 317, 327, 382, 476, 552, 850, 923
CviJI	RGCY	6 cut(s)	242, 474, 586, 680, 841, 928
CviKI_1	RGCY	6 cut(s)	242, 474, 586, 680, 841, 928
CviQI	GTAC	2 cut(s)	437, 760
DdeI	CTNAG	3 cut(s)	66, 374, 892
DpnI	GATC	3 cut(s)	258, 359, 933
DpnII	GATC	3 cut(s)	256, 357, 931
DraIII	CACNNNGTG	2 cut(s)	190, 217
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	232, 378
Eco57I	CTGAAG	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	186, 907
EcoT14I	CCWWGG	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	9 cut(s)	200, 250, 320, 330, 385, 479, 555, 853, 926
FaqI	GGGAC	2 cut(s)	44, 699
FatI	CATG	9 cut(s)	196, 246, 316, 326, 381, 475, 551, 849, 922
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	138, 472, 480, 678
FokI	GGATG	4 cut(s)	146, 534, 784, 948
Fsp4HI	GCNGC	4 cut(s)	138, 472, 480, 678
FspBI	CTAG	2 cut(s)	681, 939
GluI	GCNGC	4 cut(s)	138, 472, 480, 678
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	1 cut(s)	529
Hin1II	CATG	9 cut(s)	200, 250, 320, 330, 385, 479, 555, 853, 926
HinfI	GANTC	2 cut(s)	208, 753
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	3 cut(s)	176, 202, 422
Hpy166II	GTNNAC	3 cut(s)	332, 642, 711
Hpy8I	GTNNAC	3 cut(s)	332, 642, 711
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	7, 170
HpyCH4IV	ACGT	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	66, 374, 892
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	9 cut(s)	200, 250, 320, 330, 385, 479, 555, 853, 926
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	256, 357, 931
Lsp1109I	GCAGC	3 cut(s)	466, 483, 689
LweI	GCATC	3 cut(s)	124, 256, 970
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	2 cut(s)	681, 939
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	2 cut(s)	78, 739
MalI	GATC	3 cut(s)	258, 359, 933
MboI	GATC	3 cut(s)	256, 357, 931
MboII	GAAGA	5 cut(s)	108, 576, 673, 680, 926
MfeI	CAATTG	3 cut(s)	600, 735, 832
MluCI	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	3 cut(s)	315, 540, 552
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	3 cut(s)	188, 530, 909
MunI	CAATTG	3 cut(s)	600, 735, 832
MvaI	CCWGG	2 cut(s)	188, 909
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	3 cut(s)	256, 357, 931
NlaIII	CATG	9 cut(s)	200, 250, 320, 330, 385, 479, 555, 853, 926
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	4 cut(s)	200, 250, 320, 330
NspV	TTCGAA	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	586
PciI	ACATGT	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	208, 753
PfoI	TCCNGGA	1 cut(s)	907
PkrI	GCNGC	4 cut(s)	139, 473, 481, 679
Ppu21I	YACGTR	1 cut(s)	716
PscI	ACATGT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	186, 907
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	186, 907
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	232, 378
RsaI	GTAC	2 cut(s)	438, 761
RsaNI	GTAC	2 cut(s)	437, 760
RseI	CAYNNNNRTG	3 cut(s)	315, 540, 552
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	4 cut(s)	138, 472, 480, 678
Sau3AI	GATC	3 cut(s)	256, 357, 931
Sau96I	GGNCC	2 cut(s)	232, 378
ScrFI	CCNGG	3 cut(s)	188, 530, 909
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	124, 256, 970
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	2 cut(s)	232, 378
SmiMI	CAYNNNNRTG	3 cut(s)	315, 540, 552
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	1 cut(s)	138
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	681, 939
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	186, 528, 907
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	7, 170
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	173
TasI	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	208, 753
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	2 cut(s)	399, 618
TseI	GCWGC	3 cut(s)	471, 479, 677
TspDTI	ATGAA	3 cut(s)	536, 681, 786
TspRI	CASTG	2 cut(s)	399, 618
VpaK11BI	GGWCC	2 cut(s)	232, 378
XapI	RAATTY	2 cut(s)	883, 915
XceI	RCATGY	4 cut(s)	200, 250, 320, 330
XspI	CTAG	2 cut(s)	681, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.