Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

59792099 .. 59799312

Gene Structure 7214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG422900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACCGTTTTCATTTCCTCTATATATACCCCCCACATCTCACATATTCCCCTCTCTGTCCCCACTCAGTTTTCAAAGTTGCCAAAATCTAACCATTCAATCCTCGTCTGCTTCTCTTCTCCACCAGTGTTTGGGGTGGTTGATGCAGATATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGGTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGCAACAGGTTGATAATCTGCACAAGCATGTTCGAGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCGCATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGTGGTGAAGCATACACAGATGGGATAAATGTACCCCCTCTAATGGTTGAAAATGCTGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCATGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATAATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGAGGACTGAAGTTTTTGAACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

242

Amino Acids

26.77

Weight (kDa)

6.25

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	131
AciI	CCGC	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	665
AdeI	CACNNNGTG	2 cut(s)	211, 238
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	131, 469
AflIII	ACRYGT	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	6 cut(s)	75, 99, 476, 510, 542, 721
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	1 cut(s)	701
AluI	AGCT	1 cut(s)	701
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	492, 500, 698
AsiGI	ACCGGT	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	253, 399
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	197, 223, 443
AvaII	GGWCC	2 cut(s)	253, 399
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	487, 504, 710
BccI	CCATC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	551
BfaI	CTAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	4 cut(s)	159, 493, 501, 699
BlsI	GCNGC	4 cut(s)	160, 494, 502, 700
Bme1390I	CCNGG	2 cut(s)	209, 551
Bme18I	GGWCC	2 cut(s)	253, 399
BmgT120I	GGNCC	2 cut(s)	253, 399
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	209, 551
BmsI	GCATC	4 cut(s)	133, 145, 277, 392
Bpu10I	CCTNAGC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	665
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 469
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	125, 728
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	160, 568
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	131, 469
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	125, 728
BseXI	GCAGC	3 cut(s)	487, 504, 710
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	314
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	607
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	190, 550
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	131, 469
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	277, 378
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	125, 728
BssAI	RCCGGY	1 cut(s)	189
BssMI	GATC	2 cut(s)	277, 378
BssNI	GRCGYC	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	219, 311
BstDEI	CTNAG	2 cut(s)	66, 395
BstF5I	GGATG	2 cut(s)	160, 568
BstKTI	GATC	2 cut(s)	280, 381
BstMBI	GATC	2 cut(s)	277, 378
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	4 cut(s)	221, 271, 341, 351
BstSCI	CCNGG	2 cut(s)	207, 549
BstV1I	GCAGC	3 cut(s)	487, 504, 710
BsuRI	GGCC	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	160, 568
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	3 cut(s)	132, 420, 632
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	219, 311
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	253, 399
CseI	GACGC	1 cut(s)	673
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	458
CspAI	ACCGGT	1 cut(s)	189
CviAII	CATG	7 cut(s)	218, 268, 338, 348, 403, 497, 573
CviJI	RGCY	5 cut(s)	263, 309, 495, 607, 701
CviKI_1	RGCY	5 cut(s)	263, 309, 495, 607, 701
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	66, 395
DpnI	GATC	2 cut(s)	279, 380
DpnII	GATC	2 cut(s)	277, 378
DraIII	CACNNNGTG	2 cut(s)	211, 238
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	253, 399
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	7 cut(s)	221, 271, 341, 351, 406, 500, 576
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	7 cut(s)	217, 267, 337, 347, 402, 496, 572
Fnu4HI	GCNGC	4 cut(s)	159, 493, 501, 699
FokI	GGATG	2 cut(s)	167, 555
Fsp4HI	GCNGC	4 cut(s)	159, 493, 501, 699
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	4 cut(s)	159, 493, 501, 699
GsaI	CCCAGC	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	2 cut(s)	190, 550
HgaI	GACGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	7 cut(s)	221, 271, 341, 351, 406, 500, 576
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	190, 550
HphI	GGTGA	3 cut(s)	197, 223, 443
Hpy166II	GTNNAC	2 cut(s)	353, 663
Hpy8I	GTNNAC	2 cut(s)	353, 663
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	66, 395
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	7 cut(s)	221, 271, 341, 351, 406, 500, 576
Kzo9I	GATC	2 cut(s)	277, 378
Lsp1109I	GCAGC	3 cut(s)	487, 504, 710
LweI	GCATC	4 cut(s)	133, 145, 277, 392
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	1 cut(s)	702
MalI	GATC	2 cut(s)	279, 380
MboI	GATC	2 cut(s)	277, 378
MboII	GAAGA	4 cut(s)	108, 597, 694, 701
MfeI	CAATTG	1 cut(s)	621
MluCI	AATT	3 cut(s)	366, 504, 621
MnlI	CCTC	8 cut(s)	28, 62, 113, 207, 312, 474, 618, 698
MslI	CAYNNNNRTG	3 cut(s)	336, 561, 573
MspI	CCGG	2 cut(s)	190, 550
MspR9I	CCNGG	2 cut(s)	209, 551
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	2 cut(s)	277, 378
NlaIII	CATG	7 cut(s)	221, 271, 341, 351, 406, 500, 576
NlaIV	GGNNCC	1 cut(s)	166
NspI	RCATGY	4 cut(s)	221, 271, 341, 351
PaeI	GCATGC	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	607
PciI	ACATGT	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	4 cut(s)	160, 494, 502, 700
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	253, 399
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	3 cut(s)	336, 561, 573
SatI	GCNGC	4 cut(s)	159, 493, 501, 699
Sau3AI	GATC	2 cut(s)	277, 378
Sau96I	GGNCC	2 cut(s)	253, 399
ScrFI	CCNGG	2 cut(s)	209, 551
SetI	ASST	4 cut(s)	166, 210, 321, 703
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	4 cut(s)	133, 145, 277, 392
SinI	GGWCC	2 cut(s)	253, 399
SmiMI	CAYNNNNRTG	3 cut(s)	336, 561, 573
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	3 cut(s)	366, 504, 621
SseBI	AGGCCT	1 cut(s)	607
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	702
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	207, 549
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	2 cut(s)	194, 343
TasI	AATT	3 cut(s)	366, 504, 621
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	3 cut(s)	132, 420, 639
TseI	GCWGC	3 cut(s)	492, 500, 698
TspDTI	ATGAA	2 cut(s)	557, 702
TspRI	CASTG	3 cut(s)	132, 420, 639
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	253, 399
XceI	RCATGY	4 cut(s)	221, 271, 341, 351
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.