Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

58614013 .. 58620688

Gene Structure 6676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG435100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACCGTTTCCATTTCCTCTATATATACCCCCCACATCTCACATATTCCCCTCTCTGTCCCCACTCAGTTTTCAAAGTTGCCAAAATCTAAACATTCAATCCTCCTCCTCTGCTTCTCTTCTCCACCAGATATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGTTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGCAACAGGTTGATAATCTGCACAAGCATGTTCGAGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCACATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGTGGTGAAGCATACACAGATGGGATAAATGTACCTCCTCTAATGGTTGAAAATGCTGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCGTGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATAATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGAGGACTGAAGTTTTTGAACTGGTTGTGGACACGTAAAGAAAAGAATATTGCAATTGTTACCCATAGTGGATTCTTGTACCACACCTTGAGTGCTTTTGGAAATGATTGCCATTCATCCATTAAGAGTGAAATATCCACGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

276

Amino Acids

30.69

Weight (kDa)

6.78

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	647
AdeI	CACNNNGTG	2 cut(s)	193, 220
AfaI	GTAC	2 cut(s)	441, 764
AflIII	ACRYGT	2 cut(s)	249, 716
AgsI	TTSAA	6 cut(s)	75, 99, 458, 492, 524, 703
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	683
AluI	AGCT	1 cut(s)	683
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	3 cut(s)	474, 482, 680
AspS9I	GGNCC	2 cut(s)	235, 381
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	3 cut(s)	179, 205, 425
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	235, 381
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	469, 486, 692
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	4 cut(s)	141, 475, 483, 681
BlsI	GCNGC	4 cut(s)	142, 476, 484, 682
Bme1390I	CCNGG	2 cut(s)	191, 533
Bme18I	GGWCC	2 cut(s)	235, 381
BmgT120I	GGNCC	2 cut(s)	235, 381
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	191, 533
BmsI	GCATC	2 cut(s)	127, 259
Bpu10I	CCTNAGC	1 cut(s)	377
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	710
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	3 cut(s)	142, 550, 800
BseJI	GATNNNNATC	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	3 cut(s)	95, 98, 435
BseXI	GCAGC	3 cut(s)	469, 486, 692
BseYI	CCCAGC	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	589
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	259, 360
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	710
BssMI	GATC	2 cut(s)	259, 360
BssNI	GRCGYC	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	7, 173
Bst6I	CTCTTC	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	719
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	201, 293
BstDEI	CTNAG	2 cut(s)	66, 377
BstF5I	GGATG	3 cut(s)	142, 550, 800
BstKTI	GATC	2 cut(s)	262, 363
BstMBI	GATC	2 cut(s)	259, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	4 cut(s)	203, 253, 323, 333
BstSCI	CCNGG	2 cut(s)	189, 531
BstV1I	GCAGC	3 cut(s)	469, 486, 692
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	142, 550, 800
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	402, 614
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	201, 293
Cfr13I	GGNCC	2 cut(s)	235, 381
CseI	GACGC	1 cut(s)	655
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	440, 763
CviAII	CATG	6 cut(s)	200, 250, 320, 330, 385, 479
CviJI	RGCY	5 cut(s)	245, 291, 477, 589, 683
CviKI_1	RGCY	5 cut(s)	245, 291, 477, 589, 683
CviQI	GTAC	2 cut(s)	440, 763
DdeI	CTNAG	2 cut(s)	66, 377
DpnI	GATC	2 cut(s)	261, 362
DpnII	GATC	2 cut(s)	259, 360
DraIII	CACNNNGTG	2 cut(s)	193, 220
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	235, 381
Eco57I	CTGAAG	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	6 cut(s)	203, 253, 323, 333, 388, 482
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	6 cut(s)	199, 249, 319, 329, 384, 478
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	141, 475, 483, 681
FokI	GGATG	3 cut(s)	149, 537, 787
Fsp4HI	GCNGC	4 cut(s)	141, 475, 483, 681
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	4 cut(s)	141, 475, 483, 681
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	1 cut(s)	532
HgaI	GACGC	1 cut(s)	655
Hin1I	GRCGYC	1 cut(s)	647
Hin1II	CATG	6 cut(s)	203, 253, 323, 333, 388, 482
HinfI	GANTC	2 cut(s)	211, 756
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	3 cut(s)	179, 205, 425
Hpy166II	GTNNAC	3 cut(s)	335, 645, 714
Hpy8I	GTNNAC	3 cut(s)	335, 645, 714
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	7, 173
HpyCH4IV	ACGT	1 cut(s)	718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	66, 377
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	647
Hsp92II	CATG	6 cut(s)	203, 253, 323, 333, 388, 482
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	259, 360
Lsp1109I	GCAGC	3 cut(s)	469, 486, 692
LweI	GCATC	2 cut(s)	127, 259
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	1 cut(s)	742
MalI	GATC	2 cut(s)	261, 362
MboI	GATC	2 cut(s)	259, 360
MboII	GAAGA	4 cut(s)	111, 579, 676, 683
MfeI	CAATTG	2 cut(s)	603, 738
MluCI	AATT	4 cut(s)	348, 486, 603, 738
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	3 cut(s)	318, 543, 555
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	191, 533
MunI	CAATTG	2 cut(s)	603, 738
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	2 cut(s)	259, 360
NlaIII	CATG	6 cut(s)	203, 253, 323, 333, 388, 482
NlaIV	GGNNCC	1 cut(s)	148
NspI	RCATGY	4 cut(s)	203, 253, 323, 333
NspV	TTCGAA	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	589
PciI	ACATGT	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	211, 756
PkrI	GCNGC	4 cut(s)	142, 476, 484, 682
Ppu21I	YACGTR	1 cut(s)	719
PscI	ACATGT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	235, 381
RsaI	GTAC	2 cut(s)	441, 764
RsaNI	GTAC	2 cut(s)	440, 763
RseI	CAYNNNNRTG	3 cut(s)	318, 543, 555
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	4 cut(s)	141, 475, 483, 681
Sau3AI	GATC	2 cut(s)	259, 360
Sau96I	GGNCC	2 cut(s)	235, 381
ScrFI	CCNGG	2 cut(s)	191, 533
SetI	ASST	7 cut(s)	148, 192, 303, 445, 685, 721, 773
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	127, 259
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	2 cut(s)	235, 381
SmiMI	CAYNNNNRTG	3 cut(s)	318, 543, 555
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
SphI	GCATGC	1 cut(s)	203
Sse9I	AATT	4 cut(s)	348, 486, 603, 738
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	1 cut(s)	684
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	189, 531
TaaI	ACNGT	2 cut(s)	7, 173
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	2 cut(s)	176, 325
TasI	AATT	4 cut(s)	348, 486, 603, 738
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	211, 756
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	2 cut(s)	402, 621
TseI	GCWGC	3 cut(s)	474, 482, 680
TspDTI	ATGAA	3 cut(s)	539, 684, 789
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	2 cut(s)	402, 621
VpaK11BI	GGWCC	2 cut(s)	235, 381
XceI	RCATGY	4 cut(s)	203, 253, 323, 333
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.