AT2G17280

Phosphoglycerate mutase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004925
Physical Location & Seq
Forward (+)
7513128 .. 7515117
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17280.2

Sequence Viewer

Length: 816 bp
ATGGACAACGAAGGCATAGGTCTTTACCCGCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATGCTCAAGGGATTCATAATGTGGCTGGTGAAAAAGATCACAGTGCTTACTCTTCGGAGGATTACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTAAGGAACCATGTTCGTGCAGCTCAACTCTTAAACAAGGTTGAACTTGTCATTGTTTCCCCTATGCTTAGAACTATACAAACAGCTGTTGGTGCTTTTGGAGGAGAAGAAGATACTAATGGAGCGGATGCAACACCGTTAATGGTGGCTAATGCTGGGAGCAGCGATCGTCCTGCGATTTCTAGCTTAAATAGTCCTCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGACAGGCGAAGAAGCGTCACTGAGTACAAGGCTCTCTTTCCCGCTATTGATTTCTCAATTATTGAAACCGACAATGATGTTCTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCAGCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCAATTGTATCTCACAGTGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGCGATGACCTAAAGAAAGAGTTGTCTATACATTTGAGCAACTGTGAGCTTCGCTCAATGGTTATCGTGGATCGAGGGAACCTGGGGACTGACTCTGCAGAGACCACAAACTATCCTGGGAAGGTTCCTGAAGGACTTGATAATCCTAGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

271

Amino Acids

29.89

Weight (kDa)

5.35

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 171 - 242 2.7e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 3 cut(s) 29, 299, 465
AclWI GGATC 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 810
AdeI CACNNNGTG 1 cut(s) 58
AfaI GTAC 1 cut(s) 449
AgsI TTSAA 3 cut(s) 218, 488, 536
AjnI CCWGG 3 cut(s) 54, 741, 775
AluBI AGCT 5 cut(s) 197, 260, 360, 391, 709
AluI AGCT 5 cut(s) 197, 260, 360, 391, 709
Alw26I GTCTC 3 cut(s) 55, 638, 755
AlwI GGATC 1 cut(s) 738
ApeKI GCWGC 3 cut(s) 194, 336, 545
AsuHPI GGTGA 4 cut(s) 44, 70, 104, 422
BbvI GCAGC 3 cut(s) 206, 348, 557
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 3 cut(s) 56, 743, 777
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 55, 638, 755
BfaI CTAG 2 cut(s) 357, 807
BfmI CTRYAG 1 cut(s) 756
BisI GCNGC 3 cut(s) 195, 337, 546
BlsI GCNGC 3 cut(s) 196, 338, 547
Bme1390I CCNGG 3 cut(s) 56, 743, 777
BmiI GGNNCC 3 cut(s) 182, 740, 786
BmrFI CCNGG 3 cut(s) 56, 743, 777
BmsI GCATC 2 cut(s) 124, 292
BplI GAGNNNNNCTC 4 cut(s) 52, 84, 698, 730
BpuEI CTTGAG 2 cut(s) 54, 658
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 638, 755
BsaJI CCNNGG 2 cut(s) 742, 776
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 3 cut(s) 56, 743, 777
BseDI CCNNGG 2 cut(s) 742, 776
BseGI GGATG 2 cut(s) 307, 415
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 206, 348, 557
BseYI CCCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 343
BslFI GGGAC 1 cut(s) 760
BsmAI GTCTC 3 cut(s) 55, 638, 755
BsmFI GGGAC 1 cut(s) 760
Bso31I GGTCTC 2 cut(s) 638, 755
Bsp143I GATC 5 cut(s) 100, 340, 412, 597, 730
BspACI CCGC 3 cut(s) 29, 299, 465
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 182, 740, 786
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 1 cut(s) 738
BspTNI GGTCTC 2 cut(s) 638, 755
BsrBI CCGCTC 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 742, 776
BssMI GATC 5 cut(s) 100, 340, 412, 597, 730
Bst2UI CCWGG 3 cut(s) 56, 743, 777
Bst4CI ACNGT 5 cut(s) 107, 312, 617, 632, 704
Bst6I CTCTTC 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 176, 242, 444
BstF5I GGATG 2 cut(s) 307, 415
BstKTI GATC 5 cut(s) 103, 343, 415, 600, 733
BstMAI GTCTC 3 cut(s) 55, 638, 755
BstMBI GATC 5 cut(s) 100, 340, 412, 597, 730
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 3 cut(s) 56, 743, 777
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 54, 741, 775
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 206, 348, 557
BstXI CCANNNNNNTGG 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 2 cut(s) 307, 415
BtsIMutI CAGTG 3 cut(s) 112, 441, 622
CseI GACGC 1 cut(s) 427
CsiI ACCWGGT 1 cut(s) 54
Csp6I GTAC 1 cut(s) 448
CviAII CATG 2 cut(s) 65, 185
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 3 cut(s) 176, 242, 444
DpnI GATC 5 cut(s) 102, 342, 414, 599, 732
DpnII GATC 5 cut(s) 100, 340, 412, 597, 730
DraIII CACNNNGTG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco31I GGTCTC 2 cut(s) 638, 755
Eco57I CTGAAG 1 cut(s) 810
EcoRII CCWGG 3 cut(s) 54, 741, 775
FaeI CATG 2 cut(s) 68, 188
FaiI YATR 9 cut(s) 17, 66, 81, 186, 239, 251, 407, 577, 689
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 760
FatI CATG 2 cut(s) 64, 184
FauI CCCGC 2 cut(s) 36, 472
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 195, 337, 546
FokI GGATG 2 cut(s) 314, 402
Fsp4HI GCNGC 3 cut(s) 195, 337, 546
FspBI CTAG 2 cut(s) 357, 807
GluI GCNGC 3 cut(s) 195, 337, 546
GsaI CCCAGC 1 cut(s) 333
HgaI GACGC 1 cut(s) 427
Hin1II CATG 2 cut(s) 68, 188
HinfI GANTC 3 cut(s) 76, 517, 752
HphI GGTGA 4 cut(s) 44, 70, 104, 422
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 637, 649, 788
HpyAV CCTTC 5 cut(s) 5, 586, 646, 775, 785
HpyCH4III ACNGT 5 cut(s) 107, 312, 617, 632, 704
HpyCH4V TGCA 7 cut(s) 42, 194, 305, 396, 545, 628, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 176, 242, 444
Hsp92II CATG 2 cut(s) 68, 188
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 100, 340, 412, 597, 730
LmnI GCTCC 2 cut(s) 296, 333
Lsp1109I GCAGC 3 cut(s) 206, 348, 557
LweI GCATC 2 cut(s) 124, 292
MabI ACCWGGT 1 cut(s) 54
MaeI CTAG 2 cut(s) 357, 807
MaeIII GTNAC 2 cut(s) 422, 439
MalI GATC 5 cut(s) 102, 342, 414, 599, 732
MbiI CCGCTC 1 cut(s) 299
MboI GATC 5 cut(s) 100, 340, 412, 597, 730
MboII GAAGA 5 cut(s) 108, 293, 296, 444, 548
MfeI CAATTG 1 cut(s) 603
MluCI AATT 2 cut(s) 480, 603
MlyI GAGTC 2 cut(s) 526, 746
MnlI CCTC 6 cut(s) 115, 159, 269, 381, 545, 728
MseI TTAA 3 cut(s) 206, 314, 362
MslI CAYNNNNRTG 2 cut(s) 189, 420
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 3 cut(s) 56, 743, 777
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 3 cut(s) 56, 743, 777
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 5 cut(s) 100, 340, 412, 597, 730
NlaIII CATG 2 cut(s) 68, 188
NlaIV GGNNCC 3 cut(s) 182, 740, 786
NmeAIII GCCGAG 1 cut(s) 540
NmuCI GTSAC 2 cut(s) 422, 439
NspI RCATGY 1 cut(s) 68
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 196, 338, 547
Ple19I CGATCG 1 cut(s) 343
PleI GAGTC 2 cut(s) 525, 746
PpsI GAGTC 2 cut(s) 525, 746
Psp6I CCWGG 3 cut(s) 54, 741, 775
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 3 cut(s) 54, 741, 775
PspN4I GGNNCC 3 cut(s) 182, 740, 786
PstI CTGCAG 1 cut(s) 760
PvuI CGATCG 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 2 cut(s) 189, 420
SaqAI TTAA 3 cut(s) 206, 314, 362
SatI GCNGC 3 cut(s) 195, 337, 546
Sau3AI GATC 5 cut(s) 100, 340, 412, 597, 730
SchI GAGTC 2 cut(s) 526, 746
ScrFI CCNGG 3 cut(s) 56, 743, 777
SexAI ACCWGGT 1 cut(s) 54
SfaNI GCATC 2 cut(s) 124, 292
SfcI CTRYAG 1 cut(s) 756
SmiMI CAYNNNNRTG 2 cut(s) 189, 420
SmlI CTYRAG 2 cut(s) 69, 637
SmoI CTYRAG 2 cut(s) 69, 637
Sse9I AATT 2 cut(s) 480, 603
SsiI CCGC 3 cut(s) 29, 299, 465
SspMI CTAG 2 cut(s) 357, 807
StyD4I CCNGG 3 cut(s) 54, 741, 775
TaaI ACNGT 5 cut(s) 107, 312, 617, 632, 704
TaqI TCGA 1 cut(s) 733
TasI AATT 2 cut(s) 480, 603
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 3 cut(s) 206, 314, 362
Tru9I TTAA 3 cut(s) 206, 314, 362
TscAI CASTG 3 cut(s) 112, 448, 622
TseFI GTSAC 2 cut(s) 422, 439
TseI GCWGC 3 cut(s) 194, 336, 545
Tsp45I GTSAC 2 cut(s) 422, 439
TspDTI ATGAA 3 cut(s) 23, 68, 553
TspRI CASTG 3 cut(s) 112, 448, 622
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 357, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.