Rh7CG454100
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004925
Physical Location & Seq
Reverse (-)
59803655 .. 59810563
6909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG454100.1

Sequence Viewer

Length: 711 bp
ATGACCGTTTCCATTTCCTCTATATATACCCCCCACATCTCACATATTCCCCTCTCTGTCCCCACTCAGTTTTCAAAGTTGCCAAAATCTAAACATTCAATCCTCCTCCTCTGCTTCTCTTCTCCACCAGATATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGTTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGCAACAGGTTGATAATCTGCACAAGCATGTTCGAGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCACATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGTGGTGAAGCATACACAGATGGGATAAATGTACCTCCTCTAATGGTTGAAAATGCTGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCGTGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATAATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGAGGACTGAAGTTTTTGAACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

236

Amino Acids

26.19

Weight (kDa)

6.52

Isoelectric Point (pI)

47.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 62 - 133 8.4e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 647
AdeI CACNNNGTG 2 cut(s) 193, 220
AfaI GTAC 1 cut(s) 441
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 6 cut(s) 75, 99, 458, 492, 524, 703
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 683
AluI AGCT 1 cut(s) 683
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 474, 482, 680
AspS9I GGNCC 2 cut(s) 235, 381
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 3 cut(s) 179, 205, 425
AsuII TTCGAA 1 cut(s) 176
AvaII GGWCC 2 cut(s) 235, 381
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 469, 486, 692
BccI CCATC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 1 cut(s) 533
BfaI CTAG 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 4 cut(s) 141, 475, 483, 681
BlsI GCNGC 4 cut(s) 142, 476, 484, 682
Bme1390I CCNGG 2 cut(s) 191, 533
Bme18I GGWCC 2 cut(s) 235, 381
BmgT120I GGNCC 2 cut(s) 235, 381
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 191, 533
BmsI GCATC 2 cut(s) 127, 259
Bpu10I CCTNAGC 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 647
Bse1I ACTGG 1 cut(s) 710
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 142, 550
BseJI GATNNNNATC 1 cut(s) 273
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 710
BseRI GAGGAG 3 cut(s) 95, 98, 435
BseXI GCAGC 3 cut(s) 469, 486, 692
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 296
BshFI GGCC 1 cut(s) 589
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 532
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 176
Bsp143I GATC 2 cut(s) 259, 360
BspACI CCGC 1 cut(s) 141
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 710
BssMI GATC 2 cut(s) 259, 360
BssNI GRCGYC 1 cut(s) 647
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 7, 173
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 647
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 201, 293
BstDEI CTNAG 2 cut(s) 66, 377
BstF5I GGATG 2 cut(s) 142, 550
BstKTI GATC 2 cut(s) 262, 363
BstMBI GATC 2 cut(s) 259, 360
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 4 cut(s) 203, 253, 323, 333
BstSCI CCNGG 2 cut(s) 189, 531
BstV1I GCAGC 3 cut(s) 469, 486, 692
BsuRI GGCC 1 cut(s) 589
BtsCI GGATG 2 cut(s) 142, 550
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 402, 614
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 201, 293
Cfr13I GGNCC 2 cut(s) 235, 381
CseI GACGC 1 cut(s) 655
CsiI ACCWGGT 1 cut(s) 189
Csp6I GTAC 1 cut(s) 440
CviAII CATG 6 cut(s) 200, 250, 320, 330, 385, 479
CviJI RGCY 5 cut(s) 245, 291, 477, 589, 683
CviKI_1 RGCY 5 cut(s) 245, 291, 477, 589, 683
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 2 cut(s) 66, 377
DpnI GATC 2 cut(s) 261, 362
DpnII GATC 2 cut(s) 259, 360
DraIII CACNNNGTG 2 cut(s) 193, 220
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 235, 381
EcoRII CCWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 203, 253, 323, 333, 388, 482
FaqI GGGAC 1 cut(s) 44
FatI CATG 6 cut(s) 199, 249, 319, 329, 384, 478
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 4 cut(s) 141, 475, 483, 681
FokI GGATG 2 cut(s) 149, 537
Fsp4HI GCNGC 4 cut(s) 141, 475, 483, 681
FspBI CTAG 1 cut(s) 684
GluI GCNGC 4 cut(s) 141, 475, 483, 681
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 589
HapII CCGG 1 cut(s) 532
HgaI GACGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 6 cut(s) 203, 253, 323, 333, 388, 482
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 532
HphI GGTGA 3 cut(s) 179, 205, 425
Hpy166II GTNNAC 2 cut(s) 335, 645
Hpy8I GTNNAC 2 cut(s) 335, 645
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 7, 173
HpyCH4V TGCA 9 cut(s) 169, 203, 272, 313, 341, 388, 485, 602, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 66, 377
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 6 cut(s) 203, 253, 323, 333, 388, 482
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 2 cut(s) 259, 360
Lsp1109I GCAGC 3 cut(s) 469, 486, 692
LweI GCATC 2 cut(s) 127, 259
MabI ACCWGGT 1 cut(s) 189
MaeI CTAG 1 cut(s) 684
MalI GATC 2 cut(s) 261, 362
MboI GATC 2 cut(s) 259, 360
MboII GAAGA 4 cut(s) 111, 579, 676, 683
MfeI CAATTG 1 cut(s) 603
MluCI AATT 3 cut(s) 348, 486, 603
MslI CAYNNNNRTG 3 cut(s) 318, 543, 555
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 2 cut(s) 191, 533
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 533
NdeII GATC 2 cut(s) 259, 360
NlaIII CATG 6 cut(s) 203, 253, 323, 333, 388, 482
NlaIV GGNNCC 1 cut(s) 148
NspI RCATGY 4 cut(s) 203, 253, 323, 333
NspV TTCGAA 1 cut(s) 176
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 134
PceI AGGCCT 1 cut(s) 589
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 4 cut(s) 142, 476, 484, 682
PscI ACATGT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 235, 381
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 3 cut(s) 318, 543, 555
SatI GCNGC 4 cut(s) 141, 475, 483, 681
Sau3AI GATC 2 cut(s) 259, 360
Sau96I GGNCC 2 cut(s) 235, 381
ScrFI CCNGG 2 cut(s) 191, 533
SetI ASST 5 cut(s) 148, 192, 303, 445, 685
SexAI ACCWGGT 1 cut(s) 189
SfaNI GCATC 2 cut(s) 127, 259
SfuI TTCGAA 1 cut(s) 176
SinI GGWCC 2 cut(s) 235, 381
SmiMI CAYNNNNRTG 3 cut(s) 318, 543, 555
SphI GCATGC 1 cut(s) 203
Sse9I AATT 3 cut(s) 348, 486, 603
SseBI AGGCCT 1 cut(s) 589
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 684
StuI AGGCCT 1 cut(s) 589
StyD4I CCNGG 2 cut(s) 189, 531
TaaI ACNGT 2 cut(s) 7, 173
TaqI TCGA 2 cut(s) 176, 325
TasI AATT 3 cut(s) 348, 486, 603
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 2 cut(s) 402, 621
TseI GCWGC 3 cut(s) 474, 482, 680
TspDTI ATGAA 2 cut(s) 539, 684
TspGWI ACGGA 1 cut(s) 543
TspRI CASTG 2 cut(s) 402, 621
VpaK11BI GGWCC 2 cut(s) 235, 381
XceI RCATGY 4 cut(s) 203, 253, 323, 333
XspI CTAG 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.