Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

48964366 .. 48965041

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1392200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGCTTGTGCTCTATATTGTGGATTTTTTCTGTGTTAATTTTTGTGGGGTTGGGGGTTTGATTGATGCAGATATGGATGCCACTACGGGTCCAACTCTCTACCCGTTGCACCGGTCTAAAACTCTTCACCTGGTAAGGCATGGACAAGGGATTCACAATGTGGAAGGCGAGAAGGATCATTCGGCATACTTGTCTTATGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGAGTCAGGTTGATAATCTGCACAAGCATGTTCAAGCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

5.8

Isoelectric Point (pI)

23.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	183
AsiGI	ACCGGT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	12
BciT130I	CCWGG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	3 cut(s)	55, 67, 199
BpmI	CTGGAG	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	82
BseJI	GATNNNNATC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	236
BshTI	ACCGGT	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	175, 199
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssMI	GATC	2 cut(s)	175, 199
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	178, 202
BstMBI	GATC	2 cut(s)	175, 199
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	2 cut(s)	263, 273
BstSCI	CCNGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	89
CsiI	ACCWGGT	1 cut(s)	129
CspAI	ACCGGT	1 cut(s)	111
CviAII	CATG	3 cut(s)	140, 260, 270
CviJI	RGCY	1 cut(s)	231
CviKI_1	RGCY	1 cut(s)	231
DpnI	GATC	2 cut(s)	177, 201
DpnII	GATC	2 cut(s)	175, 199
DraIII	CACNNNGTG	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	143, 263, 273
FaiI	YATR	7 cut(s)	15, 74, 141, 187, 198, 261, 271
FatI	CATG	3 cut(s)	139, 259, 269
FokI	GGATG	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	253
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	3 cut(s)	143, 263, 273
HinfI	GANTC	2 cut(s)	151, 235
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	158, 166
HpyCH4V	TGCA	4 cut(s)	68, 109, 212, 253
Hsp92II	CATG	3 cut(s)	143, 263, 273
Kzo9I	GATC	2 cut(s)	175, 199
LpnPI	CCDG	5 cut(s)	116, 125, 143, 217, 224
LweI	GCATC	3 cut(s)	55, 67, 199
MabI	ACCWGGT	1 cut(s)	129
MalI	GATC	2 cut(s)	177, 201
MboI	GATC	2 cut(s)	175, 199
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	175, 199
NlaIII	CATG	3 cut(s)	143, 263, 273
NlaIV	GGNNCC	1 cut(s)	90
NspI	RCATGY	2 cut(s)	263, 273
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	111
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	175, 199
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	2 cut(s)	132, 243
SexAI	ACCWGGT	1 cut(s)	129
SfaNI	GCATC	3 cut(s)	55, 67, 199
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	129
TasI	AATT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	2 cut(s)	263, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.