Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

26897434 .. 26904786

Gene Structure 7353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAAGCACAGTCCGATAAAGGAGGTGGAAAGGAGATTGGGCTAGTAGCAAAGAAAAGAAACATTATAGTATGGATGGAATATTGGGCTGTAGACCAAGCTGAAATATCAAATCGACGAACTCTACCATACTGCAGTACTGTGGGTGGAGCCCTTTCTCCTGAGATGCAGCCTCCAAAGAGGCAAGCAATAATTTGGAAAAATTGGCACTTGCTGTTCCTCTCACAATTGCCAAATGCAGTAGCGCATGTCCATGACCTCTCTGGAGAATGCGGGACCTCTCCTTCTGATCAAGCAGTCAAAAGCTGTGGCAATGGCTTGGATATCTTGAATAATTTTGATCAATCTCCAAGGAGGCTGAATGACTCTATTGACAACATCAATGATCAATTTGGAGTCTCCCTCAACTTCAATATCTTTGTAACCTTGTTCTCTACTAGCACCCACTACCTATGTACCCATGTTTCCCATTACCCTCAACCTCTCCCTGTCAGAATTGTGGCACCGCAACCGTTGAACCACCATGCCGTCAAACCACGGCCAGCACAAGTGGCCGAACCACGCCACCTGATAAGAGCATATTTATGCGATGTATCTTGGAGTAAAGAAGAAGAAAAGAATTATGGTCGATTTAGTACAAGAGGTCAGGCTGCGCGTGAATCTGAGGTTGGACGGGAATTTATGTTTCGAGGCCCAAATCACACCAAGAAGCCCGAGGACGAGTTTGTGCTTCATATTCCGACTTATGATGGACAAATGGCACGATGTGAATGGTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

260

Amino Acids

29.48

Weight (kDa)

7.17

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	655
AciI	CCGC	2 cut(s)	273, 506
AcoI	YGGCCR	2 cut(s)	539, 552
AcsI	RAATTY	1 cut(s)	677
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	3 cut(s)	139, 457, 637
AgsI	TTSAA	3 cut(s)	331, 412, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AluBI	AGCT	2 cut(s)	101, 306
AluI	AGCT	2 cut(s)	101, 306
Alw26I	GTCTC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	3 cut(s)	539, 552, 691
ApeKI	GCWGC	2 cut(s)	169, 650
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	247, 655
AspS9I	GGNCC	2 cut(s)	276, 692
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	181, 637
BccI	CCATC	2 cut(s)	70, 743
BceAI	ACGGC	2 cut(s)	512, 554
BclI	TGATCA	3 cut(s)	289, 340, 385
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	44, 438
BfmI	CTRYAG	2 cut(s)	90, 133
BisI	GCNGC	2 cut(s)	170, 651
BlsI	GCNGC	2 cut(s)	171, 652
BmcAI	AGTACT	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	2 cut(s)	276, 692
BmiI	GGNNCC	3 cut(s)	151, 277, 504
BmsI	GCATC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	350, 536, 714
Bse3DI	GCAATG	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	350, 536, 714
BseGI	GGATG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	153, 654
BseXI	GCAGC	2 cut(s)	181, 637
Bsh1236I	CGCG	1 cut(s)	655
BshFI	GGCC	3 cut(s)	541, 554, 693
BshNI	GGYRCC	1 cut(s)	502
BsiHKCI	CYCGRG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	541, 554, 693
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	289, 340, 385
BspACI	CCGC	2 cut(s)	273, 506
BspANI	GGCC	3 cut(s)	541, 554, 693
BspCNI	CTCAG	2 cut(s)	154, 655
BspFNI	CGCG	1 cut(s)	655
BspLI	GGNNCC	3 cut(s)	151, 277, 504
BspMAI	CTGCAG	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	350, 536, 714
BssMI	GATC	3 cut(s)	289, 340, 385
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	12, 142, 513
BstC8I	GCNNGC	3 cut(s)	6, 186, 543
BstDEI	CTNAG	2 cut(s)	162, 663
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	655
BstHHI	GCGC	2 cut(s)	247, 655
BstKTI	GATC	3 cut(s)	292, 343, 388
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	3 cut(s)	289, 340, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	90, 133
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	2 cut(s)	181, 637
BsuRI	GGCC	3 cut(s)	541, 554, 693
BtgI	CCRYGG	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	6, 186, 543
CfoI	GCGC	2 cut(s)	247, 655
Cfr13I	GGNCC	2 cut(s)	276, 692
Csp6I	GTAC	3 cut(s)	138, 456, 636
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	4 cut(s)	248, 254, 461, 524
CviQI	GTAC	3 cut(s)	138, 456, 636
DdeI	CTNAG	2 cut(s)	162, 663
DpnI	GATC	3 cut(s)	291, 342, 387
DpnII	GATC	3 cut(s)	289, 340, 385
DraIII	CACNNNGTG	1 cut(s)	767
EaeI	YGGCCR	2 cut(s)	539, 552
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	251, 257, 464, 527
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	4 cut(s)	247, 253, 460, 523
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	3 cut(s)	289, 340, 385
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	170, 651
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	2 cut(s)	170, 651
FspBI	CTAG	2 cut(s)	44, 438
GlaI	GCGC	2 cut(s)	246, 654
GluI	GCNGC	2 cut(s)	170, 651
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	541, 554, 693
HhaI	GCGC	2 cut(s)	247, 655
Hin1II	CATG	4 cut(s)	251, 257, 464, 527
Hin6I	GCGC	2 cut(s)	245, 653
HinP1I	GCGC	2 cut(s)	245, 653
HinfI	GANTC	3 cut(s)	365, 396, 659
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	16, 289, 494, 664, 741
Hpy188III	TCNNGA	3 cut(s)	161, 264, 328
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	3 cut(s)	12, 142, 513
HpyCH4V	TGCA	4 cut(s)	4, 135, 169, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	2 cut(s)	162, 663
Hsp92II	CATG	4 cut(s)	251, 257, 464, 527
HspAI	GCGC	2 cut(s)	245, 653
Ksp22I	TGATCA	3 cut(s)	289, 340, 385
Kzo9I	GATC	3 cut(s)	289, 340, 385
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	6 cut(s)	174, 249, 501, 555, 581, 632
Lsp1109I	GCAGC	2 cut(s)	181, 637
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	2 cut(s)	44, 438
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	3 cut(s)	291, 342, 387
MboI	GATC	3 cut(s)	289, 340, 385
MboII	GAAGA	2 cut(s)	620, 623
MfeI	CAATTG	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	8 cut(s)	192, 202, 227, 334, 389, 495, 619, 677
MlyI	GAGTC	2 cut(s)	359, 405
MmeI	TCCRAC	2 cut(s)	649, 764
MslI	CAYNNNNRTG	2 cut(s)	252, 583
MunI	CAATTG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	275
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	1 cut(s)	551
NdeII	GATC	3 cut(s)	289, 340, 385
NlaIII	CATG	4 cut(s)	251, 257, 464, 527
NlaIV	GGNNCC	3 cut(s)	151, 277, 504
NspI	RCATGY	1 cut(s)	251
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	171, 652
PleI	GAGTC	2 cut(s)	359, 404
PpsI	GAGTC	2 cut(s)	359, 404
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	151, 277, 504
PspPI	GGNCC	2 cut(s)	276, 692
PspPPI	RGGWCCY	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	139, 457, 637
RsaNI	GTAC	3 cut(s)	138, 456, 636
RseI	CAYNNNNRTG	2 cut(s)	252, 583
SatI	GCNGC	2 cut(s)	170, 651
Sau3AI	GATC	3 cut(s)	289, 340, 385
Sau96I	GGNCC	2 cut(s)	276, 692
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	2 cut(s)	359, 405
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	2 cut(s)	90, 133
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	252, 583
Sse9I	AATT	8 cut(s)	192, 202, 227, 334, 389, 495, 619, 677
SsiI	CCGC	2 cut(s)	273, 506
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	2 cut(s)	44, 438
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	3 cut(s)	12, 142, 513
TaqI	TCGA	3 cut(s)	115, 628, 688
TasI	AATT	8 cut(s)	192, 202, 227, 334, 389, 495, 619, 677
TatI	WGTACW	2 cut(s)	137, 635
TfiI	GAWTC	1 cut(s)	659
TseI	GCWGC	2 cut(s)	169, 650
TspDTI	ATGAA	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	44, 438
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.