Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002061.1

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2856

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ggtgttcatccatgtgataagagaagaagcattagcgagtataggcctcttttccctgcaattgatttctcactgatagagaataatgatgacattttgtggacgcctgacataagagagaagaatgaagaagttgcagctagaggactgaagtttttgaactggttgtggacacgtaaagaaaagaatattgcaattgttacccatagtggattcttgtaccacaccttgagtgcttttggaaatgattgccattcatccattaagagtgaaatatccacgcactttgccaattgcgagctccgttccatggtaattgttgataggggtttgatagggtcaaattccacctcagcaactaattatcctggaaaaattcctcctgggcttgatcttcctagcgatgtcgcagatgagaagcatccagtttccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

145

Amino Acids

16.28

Weight (kDa)

6.32

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	343, 375
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	367, 382
AluBI	AGCT	2 cut(s)	140, 301
AluI	AGCT	2 cut(s)	140, 301
Alw21I	GWGCWC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	343, 375
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	369, 384
BfaI	CTAG	2 cut(s)	141, 399
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	369, 384
BmrFI	CCNGG	2 cut(s)	369, 384
BmsI	GCATC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	309, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	167, 425
BseBI	CCWGG	2 cut(s)	369, 384
BseDI	CCNNGG	2 cut(s)	309, 383
BseGI	GGATG	3 cut(s)	7, 257, 421
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	167, 425
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	309
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	167, 425
BssECI	CCNNGG	2 cut(s)	309, 383
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	369, 384
BstACI	GRCGYC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	7, 257, 421
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	369, 384
BstSCI	CCNGG	2 cut(s)	367, 382
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	309
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	7, 257, 421
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	299
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	2 cut(s)	12, 310
CviJI	RGCY	4 cut(s)	46, 140, 301, 388
CviKI_1	RGCY	4 cut(s)	46, 140, 301, 388
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	367, 382
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	15, 313
FaiI	YATR	5 cut(s)	13, 42, 113, 207, 311
FatI	CATG	2 cut(s)	11, 309
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	244, 408
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	2 cut(s)	141, 399
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	15, 313
HinfI	GANTC	1 cut(s)	213
Hpy166II	GTNNAC	2 cut(s)	102, 171
Hpy8I	GTNNAC	2 cut(s)	102, 171
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	3 cut(s)	59, 137, 194
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	15, 313
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	7 cut(s)	69, 120, 148, 354, 369, 381, 396
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	141, 399
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	4 cut(s)	36, 133, 140, 386
MfeI	CAATTG	3 cut(s)	60, 195, 292
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	7 cut(s)	60, 195, 292, 315, 343, 361, 375
MnlI	CCTC	4 cut(s)	57, 137, 361, 390
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	369, 384
MunI	CAATTG	3 cut(s)	60, 195, 292
MvaI	CCWGG	2 cut(s)	369, 384
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	15, 313
PceI	AGGCCT	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	367, 382
PspGI	CCWGG	2 cut(s)	367, 382
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	369, 384
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	142, 178, 230, 303, 353
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	7 cut(s)	60, 195, 292, 315, 343, 361, 375
SseBI	AGGCCT	1 cut(s)	46
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	141, 399
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	2 cut(s)	367, 382
StyI	CCWWGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	178
TasI	AATT	7 cut(s)	60, 195, 292, 315, 343, 361, 375
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	141, 246
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	2 cut(s)	343, 375
XspI	CTAG	2 cut(s)	141, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.