Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

45669195 .. 45676720

Gene Structure 7526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGTTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACACCTCTTGGCTGGCAACAGGTTGATAATCTGCACAAGCATGTTCGAGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCACATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGCGGTGAAGCATACGCAGATGGGATAGATGTACCTCCTCTAATGGTTGAAAATGCAGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCATGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCCGCAATTGATTTCTCACTGATAGAGAATGATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACACGTAAAGAAAAGGATATTGCAATTGTTACCCATAGTGGATTCTTGTACCACACCTTGAGTGCTTTTGGAAATGATTGCCATTCATCCATTAAGAGTGAAATATCCACGCACTTTGCCAATTGCGAGCTTCGTTCCATGGTAATTGTTGATAGGGGTTTGATAGGGTCAAATTCCACCTCAGCAACTAATTATCCTGGAAAAATTCCTCATGGGCTTGATCTTCCTAGCGATGTCGCAGATGAGAAGCATCCAGTTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

6.07

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	3 cut(s)	9, 279, 468
AcsI	RAATTY	2 cut(s)	754, 786
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	515
AdeI	CACNNNGTG	2 cut(s)	61, 88
AfaI	GTAC	2 cut(s)	309, 632
AflIII	ACRYGT	2 cut(s)	117, 584
AgsI	TTSAA	4 cut(s)	326, 360, 392, 571
AjnI	CCWGG	2 cut(s)	57, 778
AluBI	AGCT	2 cut(s)	551, 712
AluI	AGCT	2 cut(s)	551, 712
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	342, 350, 548
ApoI	RAATTY	2 cut(s)	754, 786
AspS9I	GGNCC	2 cut(s)	103, 249
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	47, 73, 293
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	103, 249
BanI	GGYRCC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	337, 354, 560
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	59, 780
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	2 cut(s)	552, 810
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	4 cut(s)	9, 343, 351, 549
BlsI	GCNGC	4 cut(s)	10, 344, 352, 550
Bme1390I	CCNGG	3 cut(s)	59, 401, 780
Bme18I	GGWCC	2 cut(s)	103, 249
BmgT120I	GGNCC	2 cut(s)	103, 249
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	3 cut(s)	59, 401, 780
BmsI	GCATC	2 cut(s)	127, 841
Bpu10I	CCTNAGC	2 cut(s)	245, 763
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	720
Bse1I	ACTGG	2 cut(s)	578, 836
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	59, 780
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	4 cut(s)	10, 418, 668, 832
BseJI	GATNNNNATC	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	2 cut(s)	578, 836
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	337, 354, 560
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	3 cut(s)	127, 228, 802
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	3 cut(s)	9, 279, 468
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	776
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	578, 836
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	3 cut(s)	127, 228, 802
BssNI	GRCGYC	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	59, 780
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	515
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	69, 161, 710
BstDEI	CTNAG	2 cut(s)	245, 763
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	4 cut(s)	10, 418, 668, 832
BstKTI	GATC	3 cut(s)	130, 231, 805
BstMBI	GATC	3 cut(s)	127, 228, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	59, 780
BstNSI	RCATGY	4 cut(s)	71, 121, 191, 201
BstSCI	CCNGG	3 cut(s)	57, 399, 778
BstV1I	GCAGC	3 cut(s)	337, 354, 560
BsuRI	GGCC	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	720
BtgZI	GCGATG	1 cut(s)	828
BtsCI	GGATG	4 cut(s)	10, 418, 668, 832
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	270, 482
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	3 cut(s)	69, 161, 710
Cfr13I	GGNCC	2 cut(s)	103, 249
CseI	GACGC	1 cut(s)	523
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	308, 631
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviAII	CATG	9 cut(s)	68, 118, 188, 198, 253, 347, 423, 721, 794
CviJI	RGCY	7 cut(s)	113, 159, 345, 457, 551, 712, 799
CviKI_1	RGCY	7 cut(s)	113, 159, 345, 457, 551, 712, 799
CviQI	GTAC	2 cut(s)	308, 631
DdeI	CTNAG	2 cut(s)	245, 763
DpnI	GATC	3 cut(s)	129, 230, 804
DpnII	GATC	3 cut(s)	127, 228, 802
DraIII	CACNNNGTG	2 cut(s)	61, 88
Eco130I	CCWWGG	1 cut(s)	720
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	103, 249
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	57, 778
EcoT14I	CCWWGG	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	9 cut(s)	71, 121, 191, 201, 256, 350, 426, 724, 797
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	9 cut(s)	67, 117, 187, 197, 252, 346, 422, 720, 793
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	9, 343, 351, 549
FokI	GGATG	4 cut(s)	17, 405, 655, 819
Fsp4HI	GCNGC	4 cut(s)	9, 343, 351, 549
FspBI	CTAG	2 cut(s)	552, 810
GluI	GCNGC	4 cut(s)	9, 343, 351, 549
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	400
HgaI	GACGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	9 cut(s)	71, 121, 191, 201, 256, 350, 426, 724, 797
HinfI	GANTC	2 cut(s)	79, 624
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	3 cut(s)	47, 73, 293
Hpy166II	GTNNAC	3 cut(s)	203, 513, 582
Hpy8I	GTNNAC	3 cut(s)	203, 513, 582
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	245, 763
HpySE526I	ACGT	1 cut(s)	586
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	9 cut(s)	71, 121, 191, 201, 256, 350, 426, 724, 797
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	127, 228, 802
Lsp1109I	GCAGC	3 cut(s)	337, 354, 560
LweI	GCATC	2 cut(s)	127, 841
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	2 cut(s)	552, 810
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	129, 230, 804
MboI	GATC	3 cut(s)	127, 228, 802
MboII	GAAGA	4 cut(s)	447, 544, 551, 797
MfeI	CAATTG	3 cut(s)	471, 606, 703
MluCI	AATT	9 cut(s)	216, 354, 471, 606, 703, 726, 754, 772, 786
MnlI	CCTC	7 cut(s)	57, 162, 321, 324, 468, 772, 801
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	3 cut(s)	186, 411, 423
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	3 cut(s)	59, 401, 780
MunI	CAATTG	3 cut(s)	471, 606, 703
MvaI	CCWGG	2 cut(s)	59, 780
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	3 cut(s)	127, 228, 802
NlaIII	CATG	9 cut(s)	71, 121, 191, 201, 256, 350, 426, 724, 797
NlaIV	GGNNCC	1 cut(s)	16
NspI	RCATGY	4 cut(s)	71, 121, 191, 201
NspV	TTCGAA	1 cut(s)	44
PaeI	GCATGC	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	2
PceI	AGGCCT	1 cut(s)	457
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	79, 624
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	4 cut(s)	10, 344, 352, 550
Ppu21I	YACGTR	1 cut(s)	587
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	57, 778
PspGI	CCWGG	2 cut(s)	57, 778
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	103, 249
RsaI	GTAC	2 cut(s)	309, 632
RsaNI	GTAC	2 cut(s)	308, 631
RseI	CAYNNNNRTG	3 cut(s)	186, 411, 423
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	4 cut(s)	9, 343, 351, 549
Sau3AI	GATC	3 cut(s)	127, 228, 802
Sau96I	GGNCC	2 cut(s)	103, 249
ScrFI	CCNGG	3 cut(s)	59, 401, 780
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	127, 841
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	2 cut(s)	103, 249
SmiMI	CAYNNNNRTG	3 cut(s)	186, 411, 423
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	9 cut(s)	216, 354, 471, 606, 703, 726, 754, 772, 786
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	3 cut(s)	9, 279, 468
SspMI	CTAG	2 cut(s)	552, 810
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	57, 399, 778
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	2 cut(s)	44, 193
TasI	AATT	9 cut(s)	216, 354, 471, 606, 703, 726, 754, 772, 786
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	79, 624
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	270, 489
TseI	GCWGC	3 cut(s)	342, 350, 548
TspDTI	ATGAA	3 cut(s)	407, 552, 657
TspRI	CASTG	2 cut(s)	270, 489
VpaK11BI	GGWCC	2 cut(s)	103, 249
XapI	RAATTY	2 cut(s)	754, 786
XceI	RCATGY	4 cut(s)	71, 121, 191, 201
XspI	CTAG	2 cut(s)	552, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.