Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

44137721 .. 44144447

Gene Structure 6727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G540200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACCATTTCCATCTCTGCTATATATACCCCTCCCCTCTCTCAAAATCCCCTCCTTGTCCCCTCTCCCATTTCCAAGCTCCCAAGATTCTCACCACCGCGCTCTGCCATTCTTTGTTTCTCTTCCTCTCCTCCACCACCACCAGATATGGATGCCACTACAGGTCCAAGTCTCTACCCTCTGCACCGTTCTAAAACTCTTCACCTGGTAAGGCATGCACAAGGGATTCACAATGTGGAAGGCGAAAAGGATCATAGTGCATACATGTCTTATGATCTTTTTGATGCACATCTGACCCCTCTTGGCTGGAATCAGGTTGATAATCTACACAAGCATGTTCAAGCATGTGGACTTTCTAAGAGAGTTGAGTTAGTGATCACATCTCCTTTGTTAAGGACCATGCAAACAGCAGTGGGTGTCTTCGGGGGTGGAGCATACTCAGACGGGATAGATGTACCTCCTCTAATGGTTGCAAATGCAGGGAACAGTAACCATCCTGCAATTTCAAGTCTAAACTGCCCACCATTTATAGCAGTTGAGCTTTGCCGTGAACATTTGGGGGTTCATCCATGTGACAAGAGAAGAAGTGTTAGCGAGTACCGGCCTCTCTTTCCTGCAATTGATTTTTCACTGATAGAGAATGAGGATGACATTCTGTGGACACCTGACATTAGAGAGAAGAATGAAGAAGTGGCATCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACACGTAAAGAGAAGGAGATTGCAATTGTTACCCACAGTGGATTCTTGTTTCATACCTTGAGTGCTTTTGGAAGTGATTGCCATCCATCGGTAAAGAGTGAAATATGCACACACTTTGCCAATTGTGAGCTTCGCTCGGTGATAATTGTTGATAGGAGTTTGATGGGGTCTGATTCTTCGACAACTAATTATCCTGGAAAAATTCCTCAGGGACCTGACCTTCCTAGTGACATTGCAGATGAGAAGCAATCAGAGAAGGGTGCTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

334

Amino Acids

36.6

Weight (kDa)

6.19

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	100
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	930
AcuI	CTGAAG	1 cut(s)	728
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	456, 599
AfiI	CCNNNNNNNGG	1 cut(s)	817
AflIII	ACRYGT	2 cut(s)	264, 731
AgsI	TTSAA	3 cut(s)	341, 507, 718
AjnI	CCWGG	2 cut(s)	204, 922
AluBI	AGCT	3 cut(s)	79, 541, 859
AluI	AGCT	3 cut(s)	79, 541, 859
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	930
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	3 cut(s)	164, 396, 941
AsuHPI	GGTGA	3 cut(s)	84, 194, 880
AvaII	GGWCC	3 cut(s)	164, 396, 941
AxyI	CCTNAGG	1 cut(s)	936
BbsI	GAAGAC	1 cut(s)	412
BccI	CCATC	5 cut(s)	20, 501, 819, 823, 886
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	206, 924
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	699, 954
BfmI	CTRYAG	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	206, 924
Bme18I	GGWCC	3 cut(s)	164, 396, 941
BmgT120I	GGNCC	3 cut(s)	164, 396, 941
BmiI	GGNNCC	1 cut(s)	942
BmrFI	CCNGG	2 cut(s)	206, 924
BmsI	GCATC	3 cut(s)	142, 274, 704
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpuEI	CTTGAG	1 cut(s)	808
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	2 cut(s)	288, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	725
Bse21I	CCTNAGG	1 cut(s)	936
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	2 cut(s)	288, 810
BseBI	CCWGG	2 cut(s)	206, 924
BseGI	GGATG	5 cut(s)	157, 493, 565, 652, 811
BseJI	GATNNNNATC	2 cut(s)	288, 810
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	2 cut(s)	453, 950
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	2 cut(s)	120, 450
BsgI	GTGCAG	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	601
BslFI	GGGAC	3 cut(s)	44, 717, 954
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	3 cut(s)	44, 717, 954
BsnI	GGCC	1 cut(s)	604
Bsp143I	GATC	3 cut(s)	250, 274, 375
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	452, 949
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	942
BspPI	GGATC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	960
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	3 cut(s)	250, 274, 375
Bst2UI	CCWGG	2 cut(s)	206, 924
Bst4CI	ACNGT	3 cut(s)	188, 488, 767
Bst6I	CTCTTC	2 cut(s)	127, 204
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	357, 439, 936
BstF5I	GGATG	5 cut(s)	157, 493, 565, 652, 811
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	3 cut(s)	253, 277, 378
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	250, 274, 375
BstNI	CCWGG	2 cut(s)	206, 924
BstNSI	RCATGY	4 cut(s)	218, 268, 338, 348
BstSCI	CCNGG	2 cut(s)	204, 922
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	936
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	5 cut(s)	157, 493, 565, 652, 811
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	417, 629, 772
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	164, 396, 941
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	455, 598
CviAII	CATG	6 cut(s)	215, 265, 335, 345, 400, 570
CviJI	RGCY	5 cut(s)	79, 306, 541, 604, 859
CviKI_1	RGCY	5 cut(s)	79, 306, 541, 604, 859
CviQI	GTAC	2 cut(s)	455, 598
DdeI	CTNAG	3 cut(s)	357, 439, 936
DpnI	GATC	3 cut(s)	252, 276, 377
DpnII	GATC	3 cut(s)	250, 274, 375
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	127, 204
EarI	CTCTTC	2 cut(s)	127, 204
Eco47I	GGWCC	3 cut(s)	164, 396, 941
Eco57I	CTGAAG	1 cut(s)	728
Eco81I	CCTNAGG	1 cut(s)	936
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	204, 922
FaeI	CATG	6 cut(s)	218, 268, 338, 348, 403, 573
FaqI	GGGAC	3 cut(s)	44, 717, 954
FatI	CATG	6 cut(s)	214, 264, 334, 344, 399, 569
FbaI	TGATCA	1 cut(s)	375
FokI	GGATG	5 cut(s)	164, 480, 552, 659, 798
FspBI	CTAG	2 cut(s)	699, 954
GlaI	GCGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	601
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	218, 268, 338, 348, 403, 573
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	5 cut(s)	87, 226, 310, 771, 902
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	3 cut(s)	84, 194, 880
Hpy166II	GTNNAC	4 cut(s)	350, 551, 660, 729
Hpy188I	TCNGA	4 cut(s)	294, 442, 901, 982
Hpy8I	GTNNAC	4 cut(s)	350, 551, 660, 729
HpyAV	CCTTC	4 cut(s)	233, 736, 959, 979
HpyCH4III	ACNGT	3 cut(s)	188, 488, 767
HpyCH4IV	ACGT	1 cut(s)	733
HpyF3I	CTNAG	3 cut(s)	357, 439, 936
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	6 cut(s)	218, 268, 338, 348, 403, 573
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	250, 274, 375
LmnI	GCTCC	2 cut(s)	84, 431
LweI	GCATC	3 cut(s)	142, 274, 704
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	2 cut(s)	699, 954
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	4 cut(s)	488, 572, 757, 956
MalI	GATC	3 cut(s)	252, 276, 377
MboI	GATC	3 cut(s)	250, 274, 375
MboII	GAAGA	7 cut(s)	114, 191, 412, 594, 691, 698, 897
MfeI	CAATTG	3 cut(s)	618, 753, 850
MluCI	AATT	7 cut(s)	501, 618, 753, 850, 873, 916, 930
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	2 cut(s)	333, 570
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	2 cut(s)	206, 924
MunI	CAATTG	3 cut(s)	618, 753, 850
MvaI	CCWGG	2 cut(s)	206, 924
MvnI	CGCG	1 cut(s)	100
NdeII	GATC	3 cut(s)	250, 274, 375
NlaIII	CATG	6 cut(s)	218, 268, 338, 348, 403, 573
NlaIV	GGNNCC	1 cut(s)	942
NmuCI	GTSAC	2 cut(s)	572, 956
NspI	RCATGY	4 cut(s)	218, 268, 338, 348
PaeI	GCATGC	1 cut(s)	218
PciI	ACATGT	1 cut(s)	264
PfeI	GAWTC	5 cut(s)	87, 226, 310, 771, 902
PfoI	TCCNGGA	1 cut(s)	922
Ppu21I	YACGTR	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	941
PscI	ACATGT	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	204, 922
PspGI	CCWGG	2 cut(s)	204, 922
PspN4I	GGNNCC	1 cut(s)	942
PspPI	GGNCC	3 cut(s)	164, 396, 941
PspPPI	RGGWCCY	1 cut(s)	941
RsaI	GTAC	2 cut(s)	456, 599
RsaNI	GTAC	2 cut(s)	455, 598
RseI	CAYNNNNRTG	2 cut(s)	333, 570
SaqAI	TTAA	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	250, 274, 375
Sau96I	GGNCC	3 cut(s)	164, 396, 941
ScrFI	CCNGG	2 cut(s)	206, 924
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	142, 274, 704
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	3 cut(s)	164, 396, 941
SmiMI	CAYNNNNRTG	2 cut(s)	333, 570
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	7 cut(s)	501, 618, 753, 850, 873, 916, 930
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	699, 954
StyD4I	CCNGG	2 cut(s)	204, 922
TaaI	ACNGT	3 cut(s)	188, 488, 767
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	1 cut(s)	908
TasI	AATT	7 cut(s)	501, 618, 753, 850, 873, 916, 930
TfiI	GAWTC	5 cut(s)	87, 226, 310, 771, 902
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	3 cut(s)	417, 636, 772
TseFI	GTSAC	2 cut(s)	572, 956
Tsp45I	GTSAC	2 cut(s)	572, 956
TspDTI	ATGAA	3 cut(s)	554, 699, 770
TspRI	CASTG	3 cut(s)	417, 636, 772
VpaK11BI	GGWCC	3 cut(s)	164, 396, 941
XapI	RAATTY	1 cut(s)	930
XceI	RCATGY	4 cut(s)	218, 268, 338, 348
XspI	CTAG	2 cut(s)	699, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.