Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

27047664 .. 27054451

Gene Structure 6788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1208000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACCGTGTCCATTTCTGCTATATATACCCCTCTCTTCTCCCAAAATCCCCTCTTTGTCCCCACTCCCATTTCTAAGCTCCCAAAAGTCATCTCACCATCGCCACAACCGCCGCCGCGCTCCTCCGTTCTCTGCCTCTCTTCGCCTCCAGATATGGATGCCACTACAGGTCCAAGTCTCTACCCGTTGCACCGAACTAAAACTCTTCACCTGGTAAGGCATGCACAAGGGATTCACAATGTGGAAGGCGACAAGGATCATGCGGCATACATGTCTTATGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGAGTCAGGTTGGTAATCTGCACAAGCATGTTCAAGCATGTGGACTTTCCAAGAAAATTGATTTGGTCATAACTTCTCCTTTGTTAAGGACCATGCAGACAGCAGTGGGTGTTTTTGGGGGTGAAGCATACACAGACGGGATAGATGTACCTCCTCTAATGGTTGCAAATGCTGGAAACAGTGACCATCCTGCAATTTCAAGTCTAAACTCCCCACCATTTATAGCAGTGGAGCTTTGCCGGGAACATTTGGGTGTTCATCCATGTGACCAAAGGAGAAGCATTAGCGAGTATCGGCCTCTTTTTCCTGCAATTGATTTTTCACTGATAGAGAATGAGGATGACATCTTGTGGACGCCTGACGTTAGAGAGTTAAATGAAGAAGTGGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACTCGTAAAGAGAAAGACATTGCAATTGTTTCGCACAGTGGATTCTTGTTTCATACCTTGAGTGCTTTTGGAAATGATTGCCATCCGTCTATCAAGAGCGAAATATGCACTCACTTTGCTAATTGTGAGCTTCGTTCAGTGGTAATTGTCGATAGGAGTTTGATGGGGTCTGATTCTTCAACAACTAATTATCCTGGGAAGATACCTCGCGGGCCTGATCTTCCTAGTGACGTTGCCGATGAGAAGCATTCGGAGAAGGATGCTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

336

Amino Acids

36.81

Weight (kDa)

5.94

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	118, 945
AciI	CCGC	5 cut(s)	110, 113, 116, 263, 945
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	734
AcyI	GRCGYC	1 cut(s)	668
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	347, 513, 724, 915
AjnI	CCWGG	2 cut(s)	210, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	4 cut(s)	79, 547, 704, 865
AluI	AGCT	4 cut(s)	79, 547, 704, 865
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	2 cut(s)	608, 947
ApeKI	GCWGC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	170, 402, 947
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	87, 200, 446
AvaII	GGWCC	2 cut(s)	170, 402
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	4 cut(s)	106, 507, 825, 892
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	2 cut(s)	212, 930
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	705, 960
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	4 cut(s)	113, 116, 264, 702
BlsI	GCNGC	4 cut(s)	114, 117, 265, 703
Bme1390I	CCNGG	3 cut(s)	212, 554, 930
Bme18I	GGWCC	2 cut(s)	170, 402
BmgT120I	GGNCC	3 cut(s)	170, 402, 947
BmrFI	CCNGG	3 cut(s)	212, 554, 930
BmsI	GCATC	3 cut(s)	148, 280, 985
BpmI	CTGGAG	2 cut(s)	132, 334
BpuEI	CTTGAG	1 cut(s)	814
BpuMI	CCSGG	1 cut(s)	554
BsaBI	GATNNNNATC	2 cut(s)	294, 816
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	929
Bse1I	ACTGG	1 cut(s)	731
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	2 cut(s)	294, 816
BseBI	CCWGG	2 cut(s)	212, 930
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	6 cut(s)	163, 499, 571, 658, 817, 1000
BseJI	GATNNNNATC	2 cut(s)	294, 816
BseMI	GCAATG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	2 cut(s)	112, 456
BseXI	GCAGC	1 cut(s)	713
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	118, 945
BshFI	GGCC	2 cut(s)	610, 949
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	2 cut(s)	44, 723
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	44, 723
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	2 cut(s)	610, 949
Bsp143I	GATC	3 cut(s)	256, 280, 952
BspACI	CCGC	5 cut(s)	110, 113, 116, 263, 945
BspANI	GGCC	2 cut(s)	610, 949
BspFNI	CGCG	2 cut(s)	118, 945
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	3 cut(s)	256, 280, 952
BssNI	GRCGYC	1 cut(s)	668
Bst2UI	CCWGG	2 cut(s)	212, 930
Bst4CI	ACNGT	3 cut(s)	7, 494, 773
Bst6I	CTCTTC	3 cut(s)	41, 145, 210
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	222, 947
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	6 cut(s)	163, 499, 571, 658, 817, 1000
BstFNI	CGCG	2 cut(s)	118, 945
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	259, 283, 955
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	256, 280, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 840
BstNI	CCWGG	2 cut(s)	212, 930
BstNSI	RCATGY	4 cut(s)	224, 274, 344, 354
BstSCI	CCNGG	3 cut(s)	210, 552, 928
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	2 cut(s)	118, 945
BstV1I	GCAGC	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	610, 949
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	6 cut(s)	163, 499, 571, 658, 817, 1000
BtsI	GCAGTG	2 cut(s)	423, 546
BtsIMutI	CAGTG	6 cut(s)	423, 499, 546, 635, 778, 879
Cac8I	GCNNGC	2 cut(s)	222, 947
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	170, 402, 947
CseI	GACGC	1 cut(s)	676
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	7 cut(s)	221, 260, 271, 341, 351, 406, 576
CviJI	RGCY	7 cut(s)	79, 312, 547, 610, 704, 865, 949
CviKI_1	RGCY	7 cut(s)	79, 312, 547, 610, 704, 865, 949
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	258, 282, 954
DpnII	GATC	3 cut(s)	256, 280, 952
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	41, 145, 210
EarI	CTCTTC	3 cut(s)	41, 145, 210
Eco47I	GGWCC	2 cut(s)	170, 402
Eco57I	CTGAAG	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	210, 928
FaeI	CATG	7 cut(s)	224, 263, 274, 344, 354, 409, 579
FaqI	GGGAC	2 cut(s)	44, 723
FatI	CATG	7 cut(s)	220, 259, 270, 340, 350, 405, 575
FauI	CCCGC	1 cut(s)	938
Fnu4HI	GCNGC	4 cut(s)	113, 116, 264, 702
FokI	GGATG	5 cut(s)	170, 486, 558, 665, 804
Fsp4HI	GCNGC	4 cut(s)	113, 116, 264, 702
FspBI	CTAG	2 cut(s)	705, 960
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	4 cut(s)	113, 116, 264, 702
GsuI	CTGGAG	2 cut(s)	132, 334
HaeIII	GGCC	2 cut(s)	610, 949
HapII	CCGG	1 cut(s)	553
HgaI	GACGC	1 cut(s)	676
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	7 cut(s)	224, 263, 274, 344, 354, 409, 579
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	5 cut(s)	232, 316, 736, 777, 908
HpaII	CCGG	1 cut(s)	553
HphI	GGTGA	3 cut(s)	87, 200, 446
Hpy166II	GTNNAC	3 cut(s)	356, 666, 735
Hpy188I	TCNGA	2 cut(s)	907, 988
Hpy188III	TCNNGA	2 cut(s)	149, 829
Hpy8I	GTNNAC	3 cut(s)	356, 666, 735
HpyAV	CCTTC	2 cut(s)	239, 985
HpyCH4III	ACNGT	3 cut(s)	7, 494, 773
HpyCH4IV	ACGT	2 cut(s)	675, 966
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 840
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	675, 966
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	7 cut(s)	224, 263, 274, 344, 354, 409, 579
HspAI	GCGC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	256, 280, 952
LmnI	GCTCC	3 cut(s)	84, 125, 544
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	3 cut(s)	148, 280, 985
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	2 cut(s)	705, 960
MaeII	ACGT	2 cut(s)	675, 966
MaeIII	GTNAC	3 cut(s)	494, 578, 962
MalI	GATC	3 cut(s)	258, 282, 954
MboI	GATC	3 cut(s)	256, 280, 952
MboII	GAAGA	7 cut(s)	28, 132, 197, 704, 903, 946, 947
MfeI	CAATTG	2 cut(s)	624, 759
MluCI	AATT	7 cut(s)	369, 507, 624, 759, 856, 879, 922
MlyI	GAGTC	2 cut(s)	325, 730
MseI	TTAA	2 cut(s)	398, 686
MslI	CAYNNNNRTG	3 cut(s)	339, 564, 576
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	3 cut(s)	212, 554, 930
MunI	CAATTG	2 cut(s)	624, 759
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	2 cut(s)	212, 930
MvnI	CGCG	2 cut(s)	118, 945
MwoI	GCNNNNNNNGC	2 cut(s)	109, 840
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	3 cut(s)	256, 280, 952
NlaIII	CATG	7 cut(s)	224, 263, 274, 344, 354, 409, 579
NmuCI	GTSAC	3 cut(s)	494, 578, 962
NspI	RCATGY	4 cut(s)	224, 274, 344, 354
PaeI	GCATGC	1 cut(s)	224
PciI	ACATGT	1 cut(s)	270
PctI	GAATGC	1 cut(s)	982
PfeI	GAWTC	3 cut(s)	232, 777, 908
PflFI	GACNNNGTC	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	114, 117, 265, 703
PleI	GAGTC	2 cut(s)	324, 730
PpsI	GAGTC	2 cut(s)	324, 730
PscI	ACATGT	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	210, 928
PspGI	CCWGG	2 cut(s)	210, 928
PspPI	GGNCC	3 cut(s)	170, 402, 947
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	3 cut(s)	339, 564, 576
SaqAI	TTAA	2 cut(s)	398, 686
SatI	GCNGC	4 cut(s)	113, 116, 264, 702
Sau3AI	GATC	3 cut(s)	256, 280, 952
Sau96I	GGNCC	3 cut(s)	170, 402, 947
SchI	GAGTC	2 cut(s)	325, 730
ScrFI	CCNGG	3 cut(s)	212, 554, 930
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	3 cut(s)	148, 280, 985
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	170, 402
SmiMI	CAYNNNNRTG	3 cut(s)	339, 564, 576
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	7 cut(s)	369, 507, 624, 759, 856, 879, 922
SsiI	CCGC	5 cut(s)	110, 113, 116, 263, 945
SspMI	CTAG	2 cut(s)	705, 960
StyD4I	CCNGG	3 cut(s)	210, 552, 928
TaaI	ACNGT	3 cut(s)	7, 494, 773
TaiI	ACGT	2 cut(s)	678, 969
TaqI	TCGA	1 cut(s)	885
TasI	AATT	7 cut(s)	369, 507, 624, 759, 856, 879, 922
TauI	GCSGC	3 cut(s)	115, 118, 266
TfiI	GAWTC	3 cut(s)	232, 777, 908
Tru1I	TTAA	2 cut(s)	398, 686
Tru9I	TTAA	2 cut(s)	398, 686
TscAI	CASTG	6 cut(s)	423, 499, 546, 642, 778, 879
TseFI	GTSAC	3 cut(s)	494, 578, 962
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	3 cut(s)	494, 578, 962
TspDTI	ATGAA	3 cut(s)	560, 705, 776
TspGWI	ACGGA	2 cut(s)	115, 810
TspRI	CASTG	6 cut(s)	423, 499, 546, 642, 778, 879
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	170, 402
XceI	RCATGY	4 cut(s)	224, 274, 344, 354
XspI	CTAG	2 cut(s)	705, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.